Mercurial > repos > pjbriggs > motif_tools
comparison CountUniqueIDs.xml @ 0:b67ea47730d3 draft
Version 1.0.1.
author | pjbriggs |
---|---|
date | Wed, 21 Mar 2018 06:39:41 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:b67ea47730d3 |
---|---|
1 <?xml version="1.0" encoding="utf-8"?> | |
2 <tool id="gff_unique_count" name="Count unique seq in GFF" version="@VERSION@"> | |
3 <description>Gives the non-redundant count of sequences</description> | |
4 <macros> | |
5 <import>motif_tools_macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements" /> | |
8 <command><![CDATA[ | |
9 perl $__tool_directory__/CountUniqueIDs.pl $input $output | |
10 ]]></command> | |
11 <inputs> | |
12 <param format="gff" name="input" type="data" label="GFF file" help="Select a GFF file."/> | |
13 </inputs> | |
14 <outputs> | |
15 <data format="txt" name="output" /> | |
16 </outputs> | |
17 | |
18 <help> | |
19 .. class:: infomark | |
20 | |
21 **What it does** | |
22 | |
23 This tool counts the number non-redundant sequence identifiers (seqname) in a GFF file. The tool was originally written to read a GFF file containing set of motif matches and report the number of sequences that contain one or more instances of the scanned motif. | |
24 | |
25 ---- | |
26 | |
27 .. class:: infomark | |
28 | |
29 **Options** | |
30 | |
31 A GFF formated file is required. | |
32 | |
33 ---- | |
34 | |
35 .. class:: infomark | |
36 | |
37 **Credits** | |
38 | |
39 This Galaxy tool has been developed within the Bioinformatics Core Facility at the University of Manchester. It runs the CountUniqueIDs.pl Perl script that was written by Ian Donaldson. | |
40 | |
41 Please kindly acknowledge both this Galaxy tool and CountUniqueIDs.pl if you use it. | |
42 </help> | |
43 | |
44 </tool> | |
45 |