diff CountUniqueIDs.xml @ 0:b67ea47730d3 draft

Version 1.0.1.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CountUniqueIDs.xml	Wed Mar 21 06:39:41 2018 -0400
@@ -0,0 +1,45 @@
+<?xml version="1.0" encoding="utf-8"?>
+<tool id="gff_unique_count" name="Count unique seq in GFF" version="@VERSION@">
+  <description>Gives the non-redundant count of sequences</description>
+  <macros>
+    <import>motif_tools_macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <command><![CDATA[
+  perl $__tool_directory__/CountUniqueIDs.pl $input $output
+  ]]></command>
+  <inputs>
+    <param format="gff" name="input" type="data" label="GFF file" help="Select a GFF file."/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="output" />
+  </outputs>
+
+  <help>
+.. class:: infomark
+
+**What it does**
+
+This tool counts the number non-redundant sequence identifiers (seqname) in a GFF file.  The tool was originally written to read a GFF file containing set of motif matches and report the number of sequences that contain one or more instances of the scanned motif.
+
+----
+
+.. class:: infomark
+
+**Options**
+
+A GFF formated file is required.
+
+----
+
+.. class:: infomark
+
+**Credits**
+
+This Galaxy tool has been developed within the Bioinformatics Core Facility at the University of Manchester. It runs the CountUniqueIDs.pl Perl script that was written by Ian Donaldson.
+
+Please kindly acknowledge both this Galaxy tool and CountUniqueIDs.pl if you use it.
+  </help>
+
+</tool>
+