Mercurial > repos > pjbriggs > pal_finder
view test-data/454_in.fa @ 1:771ebe02636f draft
Uploaded version 0.02.04.2: fix bug that causes tool to fail when prefix includes spaces; add explicit dependency on Perl 5.16.3.
author | pjbriggs |
---|---|
date | Mon, 23 Mar 2015 07:01:37 -0400 |
parents | 3f908e7fff4f |
children |
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>FW1N29Q04EHWSH rank=0000058 x=1727.0 y=431.5 length=236 AATAGTATAATGCACAGCAGGCAGTTAACATGCATGTGAATTGTAACACATCTGTTATAC ATTACTATTAAACTTTCTGACAGTTTCTCTTTAGGTGCTTGCCCTGCCAGGCTCCGTTGT GTAGGGTTAAAGAACAGTCGTTTACCACCTCGCAACCTGGTAAGGATCCATAATATTCCC GTAATGTGGTATCAGACAGTTTGCATTGGTGCTTAGTACCTTTTAAATTTAAATTT >FW1N29Q04ECSPS rank=0000063 x=1668.0 y=3534.0 length=259 TTTATGAATTTATCTATGTAACATTTGGCTTGGATGCTTCCTTAATTTAGCAAAGTGTCA TTGGCGCACTCCATCTCTTCCAACTAGTTTAATATTTTTATCATTTGACATCTGTTCAGT TAGGAGCAGGTCAGTTCTAAGCAACTAAGCATATGTTGACAAACTTAGCAGAAATGTTTG AGGCTTAGTCATTACTTACACAAGAGAGAGCAACAACTTACATTGATGAAATTGATCTTT GCTTATTTTAACCAGTTAT >FW1N29Q04ECFP3 rank=0000073 x=1664.5 y=3081.0 length=55 TTTGGCCCTGTATACCAATATATTGCGCTTTGATGATGCCTCCTCCCCACCCTTT >FW1N29Q04EIN9F rank=0000081 x=1735.0 y=3265.0 length=51 ATATGAGTATATAGGCCAAGGGTGGGAGGAGGCATCATCAAGACACCATAT >FW1N29Q04EE3VT rank=0000085 x=1695.5 y=727.0 length=223 GTTGCCTCATATTCTCTACGAGACATTAGTGTGGTGGTAATAGGATGCAGAATAACACTT ATAATTCATAATTGTAATTCTTGAGTTAGAAGTGAGTTAGATAGAAAGACTCATAGTAAT TAGGGATCTCACATGAGAAGGACACTTAGCAAAGGTAACAGATAGGACAGATGGCGGAGA ATGCTCCAAATGACTCTGGTAAAATGACTAACAGTCAAGATAG >FW1N29Q04ECD63 rank=0000097 x=1664.0 y=1101.0 length=199 TTCATGTCCTTCTCTATCACTCAGCCCTCCACTGTTCTCTCCCTCTCCGACCTTTCACCT TGGCTTCTCTACTTTGTCAAATCACCAGGAGAGATTACCTGAAAGACAAACAGGAAGGAT TTCTCAACTATTCAAAGCAATAGAAGTGGATTCTTAGTTGCAAACCACAGCATGTTCCTG TTGACCCAGATCCTGTTTC >FW1N29Q04EIIT4 rank=0000106 x=1734.5 y=330.0 length=354 TCTCAAGTCAAGCTGTCAATTTGCCATCTCAGCCAACTCCATCAGCTTCACCATCCATTC TTCCACTATAGGTAATGTCTTATCTTTCCACCTCTGTGCATATAAAGCCTTGCTGCTGTT ATATATAAACAAAGTTCCATAGGTTTTCCAACTGTTTATTCATCAACCGAAAGGAAGTCT CTGGTTTTGATTTAATATTAAATCTTGAAAATCTTCTGTATACAGATATGTATCTTGTTC CAGATTATTTTTGTCTTTTATAAGTCCACCAGAGATGTAGAGCAGCCTCCTCCAGCCAGC TACTGGTTGGCTATGTTATGTGGATACAAGGGCTGGATCTAAAAGTCNGCATCT >FW1N29Q04EW9OS rank=0000113 x=1902.0 y=186.5 length=85 GGTTAGTATTGAGACACGCTGTTGGCTTGGCCAGTGCTCCGTGCTAGTAATTAATAAGAA TGCTTACATAGGTCATCCTGTTGAA >FW1N29Q04ED6UB rank=0000114 x=1684.5 y=2961.0 length=344 TTGACATACACCTTAGGCCCTTCATTCATAATTAACGCTACATTTCACTTCCCTGCATAT ATTTATCAATTCTACAAGATTAGATCATCTTCCTATTAGACCCTTCTCTTTCTTCTTCCT TTCACAAACAATAAGAGATCTACAACATGTGTATCTTGTTTAACAGATAACCAATCTGTA ATGATGAAACATTAAGCCTCTGCGCATAATAACTTATCTTTCCCATAGCTGCAAACAATA ACGTAGATTAAAAGCCACATTTTGCTTTCATTAAAAGTACTTCTCAACTTTCATTGTCAG GCAAACGTAAATGTATCTTTATTGTGGCTTCATTATGCTTTGTG >FW1N29Q04EJ8OD rank=0000117 x=1753.0 y=2651.0 length=157 CATCCATGTTGCTAGTTGAGAGAACTTAATCATACTAATAAATTCATGTGTATTTGTATA TGAGTTTCAAATCCATTAGATTACTTTCCATTACATCATGGAGGTGGGAAATCTGTGGCC CTGCAAATTCTGCAGAATTACACCGGCCCACCCACTC >FW1N29Q04EBJG5 rank=0000123 x=1654.0 y=2247.0 length=322 TGGCAATGGCAAGTTACTTTCATTTCAGAGCAAGATAAAGTGGCTGCTGCAATTATTACC AAAGCTTCATAAATTACTATGCAACCTTTCAACTTCTCTAGAACTCTTCAACAAGTGAAG AGGTAAGAGAAAGAAGCAGCTTATATCCATGCCATGTTATTTACAGTTAGCATGGTTTAT TCTTCTAAATAGTACAGTATTTATGCTAATTTAGCATCAGTGCTACATCACTGTGTTTCT CAACATTGTCCTCTTTGACAGCCAAATCATTTGCTTCCAGCTTGACTATGGCACATCTCA AATCACAAAGCTTTCAAACTGC >FW1N29Q04EKD0V rank=0000126 x=1755.0 y=1389.0 length=299 TGGCTCAGATCACCGCAGATGGAGACTGCAGCCATGAATTAAGACTCTTGCTCCTTGGAG GAAGCTATGGCAACCTAGATAGCATATTAAGACAGAGATGTCACCTTGCCGACAAGATCC GCATAGTCAAGCTATGGTTTCCTAGTAGTAATGTATGGCTGTGAGAGCTGGACCATAAGA AGGCTGAGCGCCGAGATTGATGCCTTTGAACTGTGGTGCTGGAGAGACTCTTAAGAGTCC CTGGACTGCTAGGAGATCAAACCAGTCAATCTTAAGGATCAACCCTGATTGCTCATTGG >FW1N29Q04EKXU7 rank=0000132 x=1761.5 y=2529.0 length=150 TTACAACACCACTGGCAGAGGAATGGATCTAGGCAAATATGACATTGTGAGTAAGGCTCT CAGGAGACTCTCTCCTCTTTATTCATGTTTGTCCTTTGTTTGTCTTGCAAAGCCGACCAG CAAAAATAGTACCATCTAAAGCAAAGAAAT >FW1N29Q04EOC22 rank=0000134 x=1800.0 y=2476.5 length=236 TTAATATTACCTAGAATAAATGATTTCATCCTTTTTATTATTTCTATATATGAAGTGGAC TTTATTTTATTGGTTGGTTAATCTTCAGAGAAGAAATAGGAGACAGGATTTTTAAAATTA GTAACTATTTCCATGAACCAAGGAATCTACTAAATGTTATGGAGGAAACATGGCCATCAT TGATCTGCAGGTCCTCAGAATCATGTAGTAAATTTATGCAATATCATTAACTTGGC >FW1N29Q04EF0UZ rank=0000135 x=1705.0 y=2505.0 length=273 TTCTATATCGCTTAACGAGGAGTCAAGCTAACTTGGAGGAGATTTATCTTTATGAGGGTA GATGATGCCATTTATGAGGAAATGCAAGATCTTGTTGCAAGGAGCCAGTGTTGGTGATGA TTCAACTCTTCCTCCTCCACAATCTTCTGAAATGACCTCCCTTCACCCTAGTTTGACCAC TCTTCCTCCTAAACCAGCCTTCAAGCGGAAAGTCATTCTTGTTGAGGCAAAAAGGTTCTG GGGGCATTTGAAGGGCGCAGGAGTGGGAGCAAA >FW1N29Q04EH316 rank=0000142 x=1729.5 y=1660.0 length=60 TTTGGCCCTGTATACCAATATATTGCGCTTTGATGATGCTCTCCCACCCTTTGGCCCTGT >FW1N29Q04EJHIK rank=0000147 x=1745.0 y=218.0 length=370 TTTAAATTATTTGTATAATGATGGGAATATCAATTTCCTAGATTTGGTCTTCCATGAAAT CAGTATTTCCATGTCAACACCACCCAAAGAAATGAAATAAGTTGTGCAAGTGAGGTAGTC TATGTAGAAATATAGAGGGTGACCTTGACAGAGAGAGGGAAGATCTGTTACCAAGGCAAC AAACAGATAAACATGGCTTAAAACCCATACAAAGAGAGTGTTTTACAAACAGGCATCCCC TAAGAAGATAAAAAGCACATTCAGACTTGCAAGATTTTGCAAAATATAGCCCATTCTAAA TAGTTAGGCCTATGTGGCATCTGTTCCTTGGTCCAGGGCTACCCTTGTAGGGCTGACAAT CAGTCTTTCT >FW1N29Q04D6RZR rank=0000148 x=1600.5 y=1189.0 length=344 TGACTGATTACTATATTAACTATAATGTGGTTGGTTGGTTCAGTATGGGAATTCAGATTC AATCAAACACCACACTTCCTGTGTTAGCATTATGTTTGACCCACCGTGTTTAAACAACTA CATTATGGATTAACCATGACTTTCAAAGTTCCAGGCACCTTTCTAATCTGGAACTACTGA ACCTGGAGCTTCTGCAAATAATTAATGCCTGTCAACTGACTTACACTTATTCCCTTCTGT AACATTGCTGCATCTGGCAACAACGTGAGAATGTACAGCAGCCATGAAGGTCTTCTGTGT TTCATCTGACAGAAGAATTTAGCTGGAGTTCAAGTACAATTAAA >FW1N29Q04EFU7E rank=0000151 x=1703.5 y=3368.0 length=65 ATGATGCTGTCATCTAGGTGTTGTGGTTGGATGTCATGGTTGATGACAGTTGCATGTTAC GTACC >FW1N29Q04D78RB rank=0000158 x=1616.5 y=4037.0 length=274 TTAACCTGGTGATACAAATACCTGGATTTGCTGCTGGACAGCTGGAAAGAACTGCAACTG TTCACTGGCCTATGAAAGGAGTTATTCAGATGCAATATATTTAACAAGGTGCTGATAAAC TCAAACCTCACGCAAGAAGGAACTGATATGGCCATTGAGCAGCAGAAAAGTGGGCTGGGG GATACATAAAATCTAAGTAGAAACTATGTTTGCCGCCTACCCAATCCGCTTTGTTCTAAA ATGGGAAGCCTCAGAATTCACCGCTGTTCTAATT >FW1N29Q04EUK6W rank=0000162 x=1871.5 y=2102.0 length=378 TTTGGTCTGGTAGTGTCTGGTTCACATCCTTGTCTTAACAATGACCTAGCAAGGGAAGAG GAGGACTAGATCCATCATGAGAAGTGTCTGGATTCTCATAGAGGTGCCTTTAGTTAATTA GGTGCCATAGAGTCATGTTTGATTTCTGCTGACTGAATGAACAATACCTGCCATCCTGAC CTGATTCCAGTAATAATCTCTGCATTTCCCAAGCACATTCCAGTTAATTTATTTGATCCC ATTCATCTGTGATCTAAGGGTTGACCAAGGCATTAGTCACCACTAGAAATGAGAGGGTGA CAGTGACCTTGGATTGGATCATGTCTATGTGGACTCCATGCATGTGGATCCTGGTGGCCC CTGATTCTGAGAAGCTCT >FW1N29Q04EOQ8A rank=0000163 x=1805.5 y=328.0 length=252 GAATCTCAGGTATTAAGGAAATCATTGCAAAGTGATCAGGAGCTTCAAGGGCATTTAAGT TATGGAATCATACACCATAAGGAGTAGATGATCTCTGGTTACCATAGGGACCTAATGGCT AATACAGCAGCTCATCATCCCTACAGCACCTTTGACAGAGTCTTCCAGCAGGGACTACAA AGAAGTGTGTTTCTTTGCACTGAAGAGTGATTTTCACCAGAAGGAACACCTGACAGAGAT GCAGAGCTAAAT >FW1N29Q04EOZ5Y rank=0000173 x=1807.0 y=3716.0 length=55 GGTTGAGAGAGTACATGAATGTTCAGTACAAGGCCAGTTTCTTGGGTTTAATCCC >FW1N29Q04EGGLO rank=0000175 x=1710.0 y=2426.0 length=208 GCAATTAAGGCCTTGGCTACTGAGCTTCAGATGAAGTCAATTGAGAGGAGAAGAACAGCA CAGGGAATGAATCAGTAGACATAGAATAGATCGATCTAGCTAGGACTTTTGTTGAGTTGG AACAGGAGGGATATTGGAAGACAGATTTATAATAATTTAATAATGCTCAGAATCTGCTGC TGTGTCTGGGTGGCCATGGTACAGATAT >FW1N29Q04EKZW7 rank=0000178 x=1762.0 y=1097.0 length=403 GTTTAGTTGATTTGAACTGTGAGAATAATTTAATTCGACCAGAGTATAGAAACATAATTA AACAACATTCCATTCATTCAATTTAATTTCATGGGAAAGAAGAGAGAGTGAGGCCACACT CCCAATTACTTGTGGTCAGCAATCACTTTCTTTATTAGCATCAGTCACTTATTGGTTTCT GACTGTTGAGGGCAGCAGGCGACTTTGCATCACTTCAGAATCCTCTGAGCCTCTTTCTTC TCATGCTAACATCTTCTGGGTTTGCCAACTAATCTAATGTTCTGGCTCAATTGTGGTACA TCCAAAATCACAAATAGACACATACGCGCACATACATACACAAAATATATTTATGTTTTC AGAACAGAAGTGAAGCTTTGCAAAGCTGTGGATAGTCTGCTGT >FW1N29Q04EP35X rank=0000180 x=1820.5 y=2307.0 length=298 TTTATTTACCCATCTTATTTGTGCAGCTGTAAGAGATTGATAAGGGGAAAAAGCAAAAGT ATATGAATTTGTATTTGTATTTGTAATCAGAGGGATGTGTGTTTGTGTGTGTGTGTATAA GGATCCATCCCTGGATTATGGGTTCCACTTCACTGGACATGTTTACCAGAAGTGAATATA GCTATTCTAGAGGGACATTTCTGGAACACAAAAAGTAAATTAGATGAATCACATTGCATG TATATTTAAGCAATTTAAATGACACACACACACACACACACACACACACACACACACA >FW1N29Q04EQDJ2 rank=0000185 x=1823.0 y=2192.0 length=65 TTCCTGATAGGCCAGGATTCTGATTAACCTCTGCCCACTACAGGATGCTTACATGAGCTC CTGGT >FW1N29Q04EK7RS rank=0000186 x=1764.5 y=3078.5 length=112 AATGATTACGAGATCATCTCACCAACACCTTCTCTGACTCATGGCTAAGATCAGCTGGAA GGCCTTGCTTGTGACCCATTGGGAGGACTCATCTTAATCTGGGTTGAGAGCA >FW1N29Q04EO2M2 rank=0000190 x=1808.0 y=2828.5 length=262 TGGTCCTTCAGGTCTTCCAACAGTGCACCCATTGCCTCCGTAACTGAGTCCATCCACTTT GCTGCTGGTCATCCTCTTCTCTTCCTTCCATATTTCCCAGCAATAGAGCCTTCTTCAGGC AGTGAGGTCTTCACATAATGTGTCCAAAGTAGGATAATTTGAGCCTGGTCATTTATGCCT CAAATTCTTTACAGGTTAGATATCACAGCAATGACTAGGTTCTTGGACAGTAGTTAACAG TTAAGATGTTAATGTTTATTAA >FW1N29Q04EXPGO rank=0000196 x=1907.0 y=150.0 length=120 GACAGAACACACTTACAACTAGCCATATATAAGCAATGATCAGGCACCTGCCAATGTCTG AACTAAGGTAAGGGCTACTCATCAGTCACCTTCCAGACACAGATCAAGAAATCCAGAAAG >FW1N29Q04EBESH rank=0000203 x=1653.5 y=271.0 length=142 AGTCATGCAAGCCTAATCATGTAACAACATTTAAATTAAGCAAATACACTGATACCTTAT AGTTTGACTAAAGACTTTGGCTTTCCATAAACAACTCCAGTAAACTGATTTTGCTTGCTG TAGTATTCCTAGCTTAACTATT >FW1N29Q04D8NWF rank=0000214 x=1621.0 y=3181.0 length=365 TTAGGCTTAGTACATTGTATGAACTCAGATATTGTGATATATAAACCAGGGCTGGTGGCT CAACATGCTGGGTAAATCCAGCCAATTATGATAACTAGAATAGTATAGCAGTTAGTGTTA AACTTGTATAAGGGAACTCAAGTCCAAGTCCTCACTCATTCATGGAACGCCTTGTGTGAT TTTGGGCTAGTCACTCTTCTCAGCCCAACCTATCTCACAATCATGATTTAGAAATAATGG CTTAGCATGACAAATGGATCCAATCATATTCAGTATTTATTTGTTTGGGGGATGTGATGT AGAAGCATGGCTCAGTGATGCTTCTACCAAATGATACTCTCTCAAGTGTCAAACCTTCAG TACAG >FW1N29Q04ETFO7 rank=0000224 x=1858.0 y=1577.0 length=148 TTGGCCTTTCTTGATAGATAATTTCTAGTAATTTCACACATACCCGTGCTGGACCATCTC CAACACCATCTGTCCTGGGCTGACATAATTTCATCAGTTGCCCATAAACATGGAGAGTAA TGGGTTTCAGGCTGTGGGGTAGGGAGGC >FW1N29Q04ECPCP rank=0000226 x=1667.5 y=3271.0 length=376 TTAGTGATGACATCACAACTGGTTGGTGGTGCTAACAACTGCTATTGAATGTGTCTTCTC GATATATCACAGAGCCTAGCTTGTAATGCAATAACAACTAGCTGAATACATGATTTAATT GTTTGTTGCCCAGCTGTACTAATAAGCAAGCTTGATGTTAGGGATCACCCAAGGTCATTT CCTTAATGCTGCTAACCTGCTGGAGCTGTCATTTATTACTAGATTTGTTGAATTATGACC AGTGTGTTCTAAAGAGCCAGATGTTTAGTCTAAAGAATAACACATGATCTAGTAGGGATT ACAAGAGCTCCAGTTTCCCTCTGGAATTTGTTGGTCATGGCTTGTGATGATCAAAGTTGA ATATGCCTGAAATAAT >FW1N29Q04ECVNR rank=0000229 x=1669.5 y=3253.0 length=386 TTCTCTGCAAGTTGGTGGCACACATGCAGGATGGCTAAGATTATCATCTGAAATGAAAGC CACAAGGTGAACTTCCAACAAATACCATGAAAAATGACTGACCTGCAAAAGGTAGAGGTA ATAAGAACTCTGGGAAAGTTGAGCAAGTACTTAAAGAATCAGTGTTAAAATGTCATGCCA CTGATGTGTGTTAATTTCATATGGTAATTTATATGTATGGATGAGATAATTCTTGCACTG TAAATAGAATAAGGGAGAATAGAGAAAACTGCAGCCAGGTGAGTAATATTTCTTTTAGCC TGTGCAGGTGTTATTTGTTGAAAAGGTGTTGTTCTACTGTCAGGCTCAGTCCAAGAACAG TTCATCCAAATTCATTTCATTTATTG >FW1N29Q04EFJFR rank=0000232 x=1700.0 y=405.5 length=379 TGGCAATGGCAAGTTACTTCATTTCAGAGCAAGATAAAGTGGCTGCTGCAATTATTACCA AAGCTTCATAAATTACTATGCAACCTTTCAACTTCTCTAGAACTCTTCAACAAGTGAAGA GGTAAGAGAAAGAAGCAGCTTATATCCATGCCATGTTATTTACAGTTAGCATGGTTTATT CTTCTAAATAGTACAGTATTTATGCTAATTTAGCATCAGTGCTACATCACTGTGTTTCTC AACATTGTCCTCTTTTGACAGCCAAATCATTTGCTTCCAGCTTGACTATGGCACATCTCA AATCACAAAGCTTTCAAACTGCAATTTGCACACTGGAGCTTGGAGGCAAACTTATTTTGT TCACGGAAACTCTCACTCC >FW1N29Q04EGERL rank=0000233 x=1710.5 y=47.0 length=274 TTGAATCTGATCAGGAAGGTTCAACTGGTACAGAATGTAGAAGCCAGGTTACTGAGTGAG TCACCCAGTCACGTTCATGTTACTTCTTCATTGAAGCAACTGCATTGGATGTCAATTACC AAGCCAGGTTCAGAGTTTGGTTAGGATATATAAAGCCTTAAACATCTGGAAACCAGGATG CCCATCAAATTGCCTTTCTGTTATCAACCTGATTACTCACTGAGATCATCAAGTGAGGTG CTGCAATGTGTAATGAATGCTGGTGGTTGCTTGT >FW1N29Q04EILAM rank=0000235 x=1734.0 y=3516.5 length=127 TTTGGACATATGTTCAAGCCAAGGTTAGTACATTTCTCCTTCAGACCTCCCAGATGCACT