Mercurial > repos > pjbriggs > rnachipintegrator

comparison README.rst @ 3:7a8df77d1046 draft

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Uploaded version 1.0.3.
author pjbriggs
date Tue, 23 Jan 2018 11:26:50 -0500
parents dc498b03ca9a
children b695071de766
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2:dc498b03ca9a 3:7a8df77d1046
82 82
83 (Hint: to also get strand direction information i.e. +/-, also allow selection 83 (Hint: to also get strand direction information i.e. +/-, also allow selection
84 from the refGene table, and select the strand field.) 84 from the refGene table, and select the strand field.)
85 85
86 86
87 Note on Excel output files and Galaxy
88 =====================================
89
90 RnaChipIntegrator produces an Excel spreadsheet as one of its outputs,
91 however Galaxy is not currently set up by default to handle these.
92
93 To enable Excel (XLS) output file handling in Galaxy, edit the
94 ``datatypes_conf.xml`` file and add:
95
96 <datatype extension="xlsx" type="galaxy.datatypes.binary:Binary" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
97
98 Restarting Galaxy should mean that the browser correctly handles Excel outputs
99 from RnaChipIntegrator.
100
101 History 87 History
102 ======= 88 =======
103 89
104 ========== ====================================================================== 90 ========== ======================================================================
105 Version Changes 91 Version Changes
106 ---------- ---------------------------------------------------------------------- 92 ---------- ----------------------------------------------------------------------
93 1.0.3.0 - Update to ``RnaChipIntegrator`` version 1.0.3
107 1.0.2.0 - Update to ``RnaChipIntegrator`` version 1.0.2 (fixes bug with 94 1.0.2.0 - Update to ``RnaChipIntegrator`` version 1.0.2 (fixes bug with
108 zero or blank cutoff) 95 zero or blank cutoff)
109 1.0.0.0 - Update to use latest ``RnaChipIntegrator`` version 1.0.0. 96 1.0.0.0 - Update to use latest ``RnaChipIntegrator`` version 1.0.0.
110 0.5.0-0 - Significant update to bring tools in line with 97 0.5.0-0 - Significant update to bring tools in line with
111 ``RnaChipIntegrator`` version 0.5.0, including removing the 98 ``RnaChipIntegrator`` version 0.5.0, including removing the