Mercurial > repos > pjbriggs > rnachipintegrator
view test-data/features_per_peak2.out @ 1:5f69a2c1b9c9 draft
Uploaded version 1.0.0.0.
| author | pjbriggs |
|---|---|
| date | Wed, 24 Feb 2016 09:39:14 -0500 |
| parents | |
| children |
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#peak.chr peak.start peak.end gene.id strand TSS TES dist_closest dist_TSS dist_TES direction overlap_gene overlap_promoter chr1 10617233 10617437 NM_177834_Cpa6 - 10710026 10314801 0 92589 302432 . 1 0 chr1 108747519 108747791 NM_009190_Vps4b - 108739123 108665873 8396 8396 81646 U 0 0 chr1 108747519 108747791 NM_009257_Serpinb5 + 108757652 108779925 9861 9861 32134 U 0 0 chr1 108747519 108747791 NM_027971_Serpinb12 + 108831026 108853655 83235 83235 105864 U 0 0 chr1 108747519 108747791 NM_027534_Kdsr - 108656357 108617007 91162 91162 130512 U 0 0 chr1 120760212 120760461 --- --- --- --- --- --- --- --- --- --- chr1 132950929 132951247 NM_010548_Il10 + 132916424 132921547 29382 34505 29382 D 0 0 chr1 132950929 132951247 NM_001009940_Il19 - 132915234 132786042 35695 35695 164887 U 0 0 chr1 132950929 132951247 NM_008551_Mapkapk2 - 133013820 132950274 0 62573 655 . 1 0 chr1 132950929 132951247 NM_145508_Dyrk3 - 133034897 133018921 67674 83650 67674 D 0 0 chr1 133114860 133115015 NM_018750_Rassf5 - 133144761 133072991 0 29746 41869 . 1 0 chr1 133114860 133115015 NM_019777_Ikbke - 133176163 133151052 36037 61148 36037 D 0 0 chr1 133114860 133115015 NM_001136070_Lgtn + 133049773 133084235 30625 65087 30625 D 0 0 chr1 133114860 133115015 NM_145508_Dyrk3 - 133034897 133018921 79963 79963 95939 U 0 0 chr1 135582677 135582828 NM_001159649_Lax1 - 135586665 135575626 0 3837 7051 . 1 0 chr1 135582677 135582828 NM_144530_Zc3h11a - 135557956 135516445 24721 24721 66232 U 0 0 chr1 135582677 135582828 NM_213616_Atp2b4 - 135697538 135602265 19437 114710 19437 D 0 0 chr1 135851853 135852218 NM_054077_Prelp - 135865173 135806855 0 12955 44998 . 1 0 chr1 135851853 135852218 NM_054076_Optc - 135805299 135787973 46554 46554 63880 U 0 0 chr1 136956468 136956598 NM_007955_Ptprv - 137029151 137004306 47708 72553 47708 D 0 0 chr1 136956468 136956598 NM_026823_Arl8a + 137043216 137053347 86618 86618 96749 U 0 0 chr1 136956468 136956598 NM_026024_Ube2t + 136857731 136870739 85729 98737 85729 D 0 0 chr1 136956468 136956598 NM_134438_Gpr37l1 - 137069087 137054243 97645 112489 97645 D 0 0 chr1 13829227 13829564 --- --- --- --- --- --- --- --- --- --- chr1 138437726 138437860 NM_177643_Zfp281 + 138487073 138526617 49213 49213 88757 U 0 0 chr1 140381656 140381785 --- --- --- --- --- --- --- --- --- --- chr1 145591041 145591176 NM_001038592_Glrx2 + 145585774 145608282 0 5267 17106 . 1 0 chr1 145591041 145591176 NM_019562_Uchl5 + 145623774 145654586 32598 32598 63410 U 0 0 chr1 145591041 145591176 NM_013835_Trove2 - 145624178 145597816 6640 33002 6640 D 0 0 chr1 145591041 145591176 NM_145991_Cdc73 - 145549936 145274292 41105 41105 316749 U 0 0 chr1 154971572 154971673 NM_008485_Lamc2 - 155033557 154969890 0 61884 1682 . 1 0 chr1 155123313 155123435 NM_010683_Lamc1 - 155179906 155065803 0 56471 57510 . 1 0 chr1 155123313 155123435 NM_008485_Lamc2 - 155033557 154969890 89756 89756 153423 U 0 0 chr1 158510523 158510813 NM_009230_Soat1 - 158417632 158354679 92891 92891 155844 U 0 0 chr1 158510523 158510813 NM_023141_Tor3a - 158604477 158583760 72947 93664 72947 D 0 0 chr1 158537267 158537411 NM_023141_Tor3a - 158604477 158583760 46349 67066 46349 D 0 0 chr1 158537267 158537411 NM_145413_Fam20b - 158649180 158608676 71265 111769 71265 D 0 0 chr1 158537267 158537411 NM_009230_Soat1 - 158417632 158354679 119635 119635 182588 U 0 0 chr1 158580638 158580759 NM_023141_Tor3a - 158604477 158583760 3001 23718 3001 D 0 0 chr1 158580638 158580759 NM_145413_Fam20b - 158649180 158608676 27917 68421 27917 D 0 0 chr1 158835251 158835391 NM_028333_Angptl1 + 158769061 158791209 44042 66190 44042 D 0 0 chr1 159240736 159240866 BC055845_2810025M15Rik + 159342483 159350353 101617 101617 109487 U 0 0 chr1 163827897 163828062 NM_026078_Pigc + 163860747 163957217 32685 32685 129155 U 0 0 chr1 163827897 163828062 NM_010177_Fasl - 163718844 163710820 109053 109053 117077 U 0 0 chr1 164215623 164215935 NR_002870_Dnm3os + 164119785 164155671 59952 95838 59952 D 0 0 chr1 167222964 167223261 NM_145513_Tiprl - 167183116 167133855 39848 39848 89109 U 0 0 chr1 167222964 167223261 NM_145512_Sft2d2 - 167124549 167104119 98415 98415 118845 U 0 0 chr1 167906284 167906554 NM_198934_Pou2f1 - 167932753 167804181 0 26199 102103 . 1 0 chr1 170255081 170255260 --- --- --- --- --- --- --- --- --- --- chr1 17030405 17030545 NM_020604_Jph1 - 17087942 16837549 0 57397 192856 . 1 0 chr1 17030405 17030545 NM_010267_Gdap1 + 17135463 17385513 104918 104918 354968 U 0 0 chr1 172620779 172620912 NM_177068_Olfml2b + 172569075 172612915 7864 51704 7864 D 0 0 chr1 172620917 172621080 NM_177068_Olfml2b + 172569075 172612915 8002 51842 8002 D 0 0 chr1 174376470 174376659 NM_029612_Slamf9 + 174392516 174408706 15857 15857 32047 U 0 0 chr1 174376470 174376659 NM_033608_Igsf9 + 174411686 174429005 35027 35027 52346 U 0 0 chr1 174376470 174376659 NM_178598_Tagln2 + 174430123 174475991 53464 53464 99332 U 0 0 chr1 174376470 174376659 NM_026234_Pigm + 174306609 174314210 62260 69861 62260 D 0 0 chr1 181061299 181061446 --- --- --- --- --- --- --- --- --- --- chr1 182479646 182479905 NM_007415_Parp1 + 182499033 182531385 19128 19128 51480 U 0 0 chr1 182479646 182479905 NM_001103182_Lin9 + 182572002 182620816 92097 92097 140911 U 0 0 chr1 185854947 185855105 NM_022019_Dusp10 + 185755009 185899515 0 99938 44410 . 1 0 chr1 194258648 194259032 --- --- --- --- --- --- --- --- --- --- chr1 194645118 194645475 NM_144881_Hhat - 194649833 194320603 0 4358 324515 . 1 0 chr1 194645118 194645475 ENSMUST00000057543_A730013G03Rik - 194661397 194659323 13848 15922 13848 D 0 0 chr1 194645118 194645475 NM_198247_Sertad4 - 194693726 194670313 24838 48251 24838 D 0 0 chr1 194957396 194957723 NM_145415_AA408296 - 194956446 194918802 950 950 38594 U 0 1 chr1 194957396 194957723 NM_016851_Irf6 + 194979326 194998230 21603 21603 40507 U 0 0 chr1 194957396 194957723 BC055955_A130010J15Rik + 194999663 195004015 41940 41940 46292 U 0 0 chr1 194957396 194957723 NM_153137_Traf3ip3 - 195027877 195001656 43933 70154 43933 D 0 0 chr1 195324443 195324741 NM_144817_Camk1g - 195216632 195172540 107811 107811 151903 U 0 0 chr1 195330701 195330930 NM_144817_Camk1g - 195216632 195172540 114069 114069 158161 U 0 0 chr1 195338316 195338616 NM_144817_Camk1g - 195216632 195172540 121684 121684 165776 U 0 0 chr1 195342728 195342985 NM_144817_Camk1g - 195216632 195172540 126096 126096 170188 U 0 0 chr1 195384767 195385195 --- --- --- --- --- --- --- --- --- --- chr1 197057796 197057843 NM_007758_Cr2 - 197003002 196963005 54794 54794 94791 U 0 0 chr1 197057796 197057843 NM_013499_Cr1l - 196957754 196924298 100042 100042 133498 U 0 0 chr1 24609562 24609623 NM_007733_Col19a1 - 24602262 24258667 7300 7300 350895 U 0 0 chr1 24609562 24609623 NM_026719_Lmbrd1 + 24593456 24847969 0 16106 238346 . 1 0 chr1 24609923 24609992 NM_007733_Col19a1 - 24602262 24258667 7661 7661 351256 U 0 0 chr1 24609923 24609992 NM_026719_Lmbrd1 + 24593456 24847969 0 16467 237977 . 1 0 chr1 24730996 24731077 NM_026719_Lmbrd1 + 24820582 24823143 89505 89505 92066 U 0 0 chr1 24730996 24731077 NM_007733_Col19a1 - 24602262 24258667 128734 128734 472329 U 0 0 chr1 26734195 26734485 --- --- --- --- --- --- --- --- --- --- chr1 34206924 34207100 --- --- --- --- --- --- --- --- --- --- chr1 36106813 36107058 NM_015818_Hs6st1 + 36125255 36163289 18197 18197 56231 U 0 0 chr1 39492140 39492513 NM_018775_Tbc1d8 - 39544345 39428350 0 51832 63790 . 1 0 chr1 39492140 39492513 NM_053257_Rpl31 + 39421000 39429094 63046 71140 63046 D 0 0 chr1 39492140 39492513 BC049091_D1Bwg0212e + 39592545 39603734 100032 100032 111221 U 0 0 chr1 40325917 40326123 NM_008362_Il1r1 + 40274145 40373439 0 51772 47316 . 1 0 chr1 40325917 40326123 NM_133193_Il1rl2 + 40381454 40447345 55331 55331 121222 U 0 0 chr1 44195449 44195639 NM_011729_Ercc5 + 44204270 44256568 8631 8631 60929 U 0 0 chr1 44195449 44195639 NM_023645_Kdelc1 - 44177102 44143458 18347 18347 51991 U 0 0 chr1 44195449 44195639 NM_144558_Bivm + 44175822 44201615 0 19627 5976 . 1 0 chr1 52625416 52625560 NM_008667_Nab1 - 52611216 52487127 14200 14200 138289 U 0 0 chr1 52625416 52625560 NM_001142647_Tmem194b + 52687569 52708760 62009 62009 83200 U 0 0 chr1 54631692 54631815 ENSMUST00000094950_Pgap1 - 54614539 54529849 17153 17153 101843 U 0 0 chr1 55283572 55283675 NM_028713_Rftn2 - 55283748 55227030 0 73 56542 . 1 1 chr1 55283572 55283675 NM_175439_Mars2 + 55294084 55297625 10409 10409 13950 U 0 0 chr1 55283572 55283675 NM_025283_Mobkl3 + 55187734 55211736 71836 95838 71836 D 0 0 chr1 63664888 63665018 NM_011780_Adam23 + 63640970 63642850 22038 23918 22038 D 0 0 chr1 63664888 63665018 NM_029696_Mdh1b - 63776894 63745401 80383 111876 80383 D 0 0 chr1 63664888 63665018 NM_172422_Fastkd2 + 63777134 63803028 112116 112116 138010 U 0 0 chr1 72769824 72770056 NM_176980_Ankar - 72747143 72689581 22681 22681 80243 U 0 0 chr1 72769824 72770056 NM_008342_Igfbp2 + 72840313 72899038 70257 70257 128982 U 0 0 chr1 72770058 72770226 NM_176980_Ankar - 72747143 72689581 22915 22915 80477 U 0 0 chr1 72770058 72770226 NM_008342_Igfbp2 + 72840313 72899038 70087 70087 128812 U 0 0 chr1 72815517 72815742 NM_008342_Igfbp2 + 72840313 72899038 24571 24571 83296 U 0 0 chr1 72815517 72815742 NM_176980_Ankar - 72747143 72689581 68374 68374 125936 U 0 0 chr1 72815517 72815742 NM_010518_Igfbp5 - 72921468 72904507 88765 105726 88765 D 0 0 chr1 75481920 75482054 NM_001001565_Chpf - 75476437 75470923 5483 5483 10997 U 0 0 chr1 75481920 75482054 NM_178884_Obsl1 - 75503218 75482401 347 21164 347 D 0 0 chr1 75481920 75482054 NM_010564_Inha + 75503647 75506924 21593 21593 24870 U 0 0 chr1 75481920 75482054 NM_183022_Accn4 + 75447063 75470207 11713 34857 11713 D 0 0 chr1 77457642 77457791 NM_007936_Epha4 - 77511653 77280640 0 53862 177002 . 1 0 chr1 78630893 78631160 NM_028817_Acsl3 + 78654388 78743434 23228 23228 112274 U 0 0 chr1 78630893 78631160 NM_011811_Farsb - 78506689 78414533 124204 124204 216360 U 0 0 chr1 88408969 88409267 NM_172974_Cops7b + 88478926 88503950 69659 69659 94683 U 0 0 chr1 88408969 88409267 NM_008801_Pde6d - 88479102 88427331 18064 69835 18064 D 0 0 chr1 88408969 88409267 NM_010341_Nmur1 - 88297441 88282479 111528 111528 126490 U 0 0 chr1 89989553 89989714 NM_201641_Ugt1a10 + 89922380 90115570 0 67173 125856 . 1 0 chr1 89989553 89989714 NM_008299_Dnajb3 - 90102337 90101307 111593 112623 111593 D 0 0 chr1 90412932 90413132 NM_008132_Glrp1 - 90406631 90396446 6301 6301 16486 U 0 0 chr1 90412932 90413132 NM_029269_Spp2 + 90303568 90373213 39719 109364 39719 D 0 0 chr1 90592499 90592629 NM_177305_Arl4c - 90617572 90569702 0 24943 22797 . 1 0 chr1 91496003 91496145 --- --- --- --- --- --- --- --- --- --- chr1 91496155 91496319 --- --- --- --- --- --- --- --- --- --- chr1 92070253 92070431 NM_007722_Cxcr7 + 92100063 92112863 29632 29632 42432 U 0 0 chr1 95186508 95186637 NM_178051_Mterfd2 - 95202630 95195779 9142 15993 9142 D 0 0 chr1 95186508 95186637 NM_023200_Ppp1r7 + 95239431 95266345 52794 52794 79708 U 0 0 chr1 95186508 95186637 NM_080850_Pask - 95240039 95205357 18720 53402 18720 D 0 0 chr1 95186508 95186637 NM_172463_Sned1 + 95132418 95197642 0 54090 11005 . 1 0 chr1 9619046 9619167 NM_178399_3110035E14Rik + 9591248 9617222 1824 27798 1824 D 0 0 chr1 9619046 9619167 NM_008651_Mybl1 - 9690280 9635825 16658 71113 16658 D 0 0 chr1 9619046 9619167 NM_175236_Adhfe1 + 9538049 9570746 48300 80997 48300 D 0 0 chr1 9619046 9619167 NM_021511_Rrs1 + 9535513 9537532 81514 83533 81514 D 0 0 chr1 9619175 9619382 NM_178399_3110035E14Rik + 9591248 9617222 1953 27927 1953 D 0 0 chr1 9619175 9619382 NM_008651_Mybl1 - 9690280 9635825 16443 70898 16443 D 0 0 chr1 9619175 9619382 NM_175236_Adhfe1 + 9538049 9570746 48429 81126 48429 D 0 0 chr1 9619175 9619382 NM_021511_Rrs1 + 9535513 9537532 81643 83662 81643 D 0 0