annotate test-data/trimmomatic_maxinfo.fastq @ 7:6eeacf19a38e draft

Version 0.36.3: fix the naming of output collections to differentiate btwn paired/unpaired; document the _JAVA_OPTIONS env var (thanks Marius van den Beek).
author pjbriggs
date Tue, 21 Mar 2017 08:42:05 -0400
parents 14d05f2d511d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
2 AGATAGCCGAAGATAAAGAGNTCATAACCGTAAAGGCCAGAGACGAGAACCACTCGCAGGCAAGGTTTGCAAGCCTCGCCAAGAATATTATAGACCCGCTTGCCAACGACTGGCATTACATCACCGTAAAGAAGG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
3 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
4 ?????BBB@BBBB?BBFFFF#66EAFHHHCEFEDFGHHHHF@DFHACEEF@FDFHHHHEEEHHHF?FGEHFHDEFGHHCEHEFHHHHFFFCFDFFFFBEEEEEEEEEEEB?EEEEEEEEEEEBBEE?CE?:ACCC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
6 ATATATTCATCCGCCATTATNAGAGTCCGATTACTTTAGAACAGTGCCGCGAATCCTTCGTCAACTGTAATCCAAGCGACATTGGTTCGATTAGCACGCATGAGGCACGAGATCTACGCGTATCTCTGG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
7 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
8 ?????BBBDDDDADDDE@FF#66CFCFHHBEHHIIIHIIHHFHHGHHHHHHHHHHIHIHIFHHHHHHEGFHIHHIIIHHHHHHHHCFHHHHHHHFFFFFFEEEEFFEFEEBBEEEFFE@E8;EEFFFEF
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
10 CATCACTACCGCTCAGGAATNTGACGGCAGTCTTAGCGGCGCTCTAGTGCGGGAGGCCGTATCTTGGAATAAGGTGTCGTCAAATGCAAGGCAGGTAACCCTACACGCCG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
11 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
12 ?<,<?BBBBBBBBBBBFFFF#6ACECCEC78CE=CGHEH7CHCHFGHADGHHHCCCHHE<DFHFFFFDFFFFFFDFDFDDEEEEEEEEECAEEEE;?BEEEBEEBCE;C;
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
14 GAGCAGTCGGGCTCAGCGCTNTGCAAATTCTAGTTAGAAACTCACAGTTCTGACAAGCCTTAGGTCAGTGTGATTGGCGGTTAGTCAACTCGG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
15 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
16 5====>/<@@@@@@>@CCCE#66>ACEEEEGGGGGGGFFFEFDFFFFF=CDEFFFFEDEFFFFFC=AEBF-AA@CE;ECD5<5<==C==DEEE
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
18 GGTATCCCCCGGCAGTGAGGATGGAGCCATGGTCTGCATCATACTCACCGTAGGTGAGAATATCCACGTCCTTCGACTCCTGGGTGCCGTCTATGGTGCCCTCTGTTACCAGGCAGTGACGGAGGACATGG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
19 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
20 ??,<?BBBDDDDDDD<FFF@FC;FFFBEFHHHCDDHHGHHHDGHHHFHHEA?EEAEEHDEFHHHHHFECFHHHFHDHEEHHCFH7CEFHDEHHCFHHFHHF=FFFDFDFFFFEEEEDDEFEEE<BBCEBCE
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
22 AAAATAATCCTAAAAAATAACCTCTATGCCGCCGAACGCTCCGCCTCTATCTTCGTAAAAACTATCTTCTCCTCCTCACCTCCATAATCAAGCATCAAGCGATCGCCCTCCGCCAACTCACCCCGCAAAATCTTATCCGCTAGCGGATTCTCAATCTCCGTCTGAATGACCCGCC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
23 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
24 ?????BBBDDDDDDDDGGGGGGIIIHHFFHHHHHHHHHHEHHEHHHHHIIHHHHHFEHIIIHHIHHIHIHIIIIIHHHHHHHHHHHHHHHHDHHHHHHHHGEDFGGGGGGG;CEGEGCEGGGGG8>GGGGEGGEECEGGGGD8EDGGAEGEEGGCE:CGG8CEEGG???CEE<DG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
25 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
26 GTAGTATTCTCATATCACAAGTCCCCAAACTGCATAAGGTGTGGAGTGGAGTGTCTCCCACTGCATTTTGTTGGTTTGGGTTGCATTTTTTGTGGCACAAAATTATCTTTAAACACTCTAAGCTCATATTTGCACATGCAACATGAATT
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
27 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
28 55,,5?9BBBBB<<BBFFFFFFFHHFBEFHFHHHFDFCF0A9@>9D9DFG;FHHHHGHHFFFFHHHHECDCEFF>EFEEEE@CDFEFHHGHHHHEHDGHHFHDFHFHHHHFFHHH@FDD??DFFFFDBBEEBEEEEEEEEEEEEEEEEE
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
29 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 1:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
30 CTTCCCCACGGCCCAGACACAAGAGACGACCTCCATAAATCTTTTAGAGGGTGACCGCATCTCCGACGCAAACCAGGACGCCGATACCCTCGTGGTGGTGTTCGACCGTACGGATGGCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
31 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
32 ?????BBBDBDDDDDDFFFFFFHIHIHHHHHHIHIFGGHFHHHHIIFHIHH?EEGHHHHHH-EGEHHCEHHHHH@FDFFEFF5@EEEFFEFE;AECCE;AEEEEEA?8?AEDDEEDFFDE
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
33 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 1:N:0:TAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
34 GTGCAGGGGGTGTGGTCAATCCACACTGTTGCTGAGGTGATTGGGTCTCCGGGGTCAACTCCATGAGGTAGCAGACCAG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
35 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
36 =5===<>+5<5<+5=@CC;8CEEEEE;-8ACFDE.7C87CF-A>E>E=FFE**>>5AEDAEED-5-5AADC=D+=DDE<
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
37 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 1:N:0:TAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
38 TCTCAGATGAGCATGCAGCAGCCCAGACTCGCCCCACGCAGTTTGCCAACCACAAGGCCATCCTCGGCCTGTCAGCCT
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
39 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
40 =,,<=>>>@@@@@9@@CCEE@EE+++6C8-++CECE+>DCC>@@EFFFFEEEDEE55+ACEF;-C+>EE++CBA--5A