Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/Illumina_SG_R1.fastqsolexa @ 13:898b67846b47 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated to Trimmomatic 0.38.
author pjbriggs
date Mon, 08 Jul 2019 07:09:10 -0400
parents 59054f086eca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
2 AGATAGCCGAAGATAAAGAGNTCATAACCGTAAAGGCCAGAGACGAGAACCACTCGCAGGCAAGGTTTGCAAGCCTCGCCAAGAATATTATAGACCCGCTTGCCAACGACTGGCATTACATCACCGTAAAGAAGGTAGGCAAGAATCACTGGATCAGCATAACAGATGAGGGTAGAGACGCCGTATCGTTTCTGGGCTAGGTTATCTGGGCCGCCTTCTTGCGTCGGCGCACAGTCACAAAGGAAATGCC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
3 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
4 ^^^^^aaa_aaaa^aaeeee>UUd`egggbdedcefgggge_ceg`bdde_eceggggdddggge^efdgegcdefggbdgdeggggeeebeceeeeaddddddddddda^dddddddddddaadd^bd^Y`bbbH^^b``ddbdY^db`Y^`H^dddd^dddd^O``bN^WGOOHHOYWEWZSWH^WNW^`ddddWY`HWHOYHHOHHY^b^SWO^dd^`>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
6 ATATATTCATCCGCCATTATNAGAGTCCGATTACTTTAGAACAGTGCCGCGAATCCTTCGTCAACTGTAATCCAAGCGACATTGGTTCGATTAGCACGCATGAGGCACGAGATCTACGCGTATCTCTGGTAGATACACCAGGAGGGATGAGAGTTGAGCGAGTTAGCTGTGGCCAGAGAGATGGGTCTAATCGTAGTCTACAACTGGGAGTCACATGCCACTACCGACTAATCTGGTCGCCGAACGGGAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
7 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
8 ^^^^^aaacccc`cccd_ee>UUbebeggadgghhhghhggeggfgggggggggghghgheggggggdfeghgghhhggggggggbegggggggeeeeeeddddeededdaadddeed_dWZddeeedeHY`dddddeeed``d`^`^`b`de^bddedcQ[M^``dbd`dedddW^^`W^b``dP^ddd^`dHWWW`ddddeddee`W`W^`bd`ddd`d^bY^^dcQ[dYbHY^HYW^dc[]WMGW^[
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
10 CATCACTACCGCTCAGGAATNTGACGGCAGTCTTAGCGGCGCTCTAGTGCGGGAGGCCGTATCTTGGAATAAGGTGTCGTCAAATGCAAGGCAGGTAACCCTACACGCCGAGGTTACCACTATACTCCCGTTTCTATATTCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATATCGGTTGCCGTCTTCTGCTTGAAAAAAAAAAACAAACAAGAGAAGACGACGTACTGCACCACCA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
11 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
12 ^[K[^aaaaaaaaaaaeeee>U`bdbbdbVWbd\bfgdgVbgbgefg`cfgggbbbggd[cegeeeeceeeeeecececcdddddddddb`ddddZ^adddaddabdZbZSWZG^``bbddd^``^Y^dWW`ddYbd^``ddddY^HHHOYH^^``dddddd`^MWZd>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
14 GAGCAGTCGGGCTCAGCGCTNTGCAAATTCTAGTTAGAAACTCACAGTTCTGACAAGCCTTAGGTCAGTGTGATTGGCGGTTAGTCAACTCGGAGAAAGCGTCTTTTCCCGACTTGAATGGTTTGTCCCGACAGTTCGTTGACTGGGGTTTCGTCAGCCTTGAGCGGGGTTCCATCCATCTTTATCGCGCCTTGGGAAAGTAGTCGGCGGGCTTCGGGGTTGGGTGAGGGCAATCCTTGTTCGGTCAAAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
15 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
16 T\\\\]N[______]_bbbd>UU]`bddddfffffffeeedeceeeee\bcdeeeedcdeeeeeb\`daeL``_bdZdbcT[T[\\b\\cdddGWRbc\\_JS_cddH[cP[GP_ZWWWHXOZHPXWW_GQGESZ\dd>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
18 GGTATCCCCCGGCAGTGAGGATGGAGCCATGGTCTGCATCATACTCACCGTAGGTGAGAATATCCACGTCCTTCGACTCCTGGGTGCCGTCTATGGTGCCCTCTGTTACCAGGCAGTGACGGAGGACATGGTGAGGTTTCAGTACCTCTGGCCCGGCCTGGGTCACAGGGTCAGACTGGGTGACCTTCATGAAGCGTCTGGTGACGTAGCTGTGATAGTCCAGCTTGGCAACCTCTGCTGGTTGCAGAGG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
19 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
20 ^^K[^aaaccccccc[eee_ebZeeeadegggbccggfgggcfgggeggd`^dd`ddgcdegggggedbegggegcgddggbegVbdegcdggbeggegge\eeececeeeeddddccdeddd[aabdabdK\\`dPYY``ddbddH^H``dee^^]c^GWGY`W^db^WHHHOHOOYW^HGOHPY^b`bbY``^ZG^dde`ddbdWWHGP`HPOHPYHP^Y`bYY`GHYYHW`bddd^>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
22 AAAATAATCCTAAAAAATAACCTCTATGCCGCCGAACGCTCCGCCTCTATCTTCGTAAAAACTATCTTCTCCTCCTCACCTCCATAATCAAGCATCAAGCGATCGCCCTCCGCCAACTCACCCCGCAAAATCTTATCCGCTAGCGGATTCTCAATCTCCGTCTGAATGACCCGCCTCAGCGGCCGCGCCCCATAAACCGAATCAAATCCACGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
23 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
24 ^^^^^aaaccccccccffffffhhhggeeggggggggggdggdggggghhgggggedghhhgghgghghghhhhhggggggggggggggggcggggggggfdcefffffffZbdfdfbdfffffW]ffffdffddbdffffcWdcff`dfddffbdYbffWbddff^^^bdd[cfWbbH^^]cfMW[`ffffbddfHbQ[fbbdbdHY^bd^bdXbYbYbY^bHPHHOPOYH^dWQEQ[fbd>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
25 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
26 GTAGTATTCTCATATCACAAGTCCCCAAACTGCATAAGGTGTGGAGTGGAGTGTCTCCCACTGCATTTTGTTGGTTTGGGTTGCATTTTTTGTGGCACAAAATTATCTTTAAACACTCTAAGCTCATATTTGCACATGCAACATGAATTGGAGCATTTCTTTTGCAGTCAACTGCCAGTACATTAACTCCACTCTGTAATAGTAAATCCTGTCTCTTATCCACATCTCCGAGCCCACGAGAATAAGGCGA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
27 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
28 TTKKT^Xaaaaa[[aaeeeeeeeggeadegegggecebeO`X_]XcXcefZeggggfggeeeeggggdbcbdee]dedddd_bcedeggfggggdgcfggegcegeggggeeggg_ecc^^ceeeecaaddadddddddddddddddddKZ^bdbZbddddba^bddddddddbddd^b^bdHO^HHHNYYY^YHN^Y`YYHHNYHY`bd^OYYY`YYHHHOOYYHN^bWWW^^ddd>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
29 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
30 CTTCCCCACGGCCCAGACACAAGAGACGACCTCCATAAATCTTTTAGAGGGTGACCGCATCTCCGACGCAAACCAGGACGCCGATACCCTCGTGGTGGTGTTCGACCGTACGGATGGCGCAGACACCGACGGCACTAGTGCCACGGTATCAGGTACCACCATAACGTATGATTCGGGCACGCTCAAGGGCCAGCGTGACGGAATCGATAGAATACACTACACGGTGACTGATGGGGCCAGCCAAACCTGT
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
31 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
32 ^^^^^aaacacccccceeeeeeghghgggggghgheffgegggghheghgg^ddfggggggLdfdggbdggggg_eceedeeT_dddeededZ`dbbdZ`ddddd`^W^`dccddceecdQ]]ddee[[[Q]c^cdddHYb^``[]W`debddY^b^ddd^bdeddO^Yd^`bddbcW]dd]GW]dYbddddddcMG^`d^^`^Y`^H^^YbO^bbd^```YWWMWW^YYbYb^HWGS`^`>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
33 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 1:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
34 GTGCAGGGGGTGTGGTCAATCCACACTGTTGCTGAGGTGATTGGGTCTCCGGGGTCAACTCCATGAGGTAGCAGACCAGTGCCAGAGATAGTGACCACAGTGTTGGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAGACTTTTAAAAAACCGATCTACACCTTGACAGGCTATTAAAGGAAACTGGCCTGGTATCACAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
35 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
36 \T\\\[]JT[T[JT\_bbZWbdddddZLW`becdMVbWVbeL`]d]d\eedHH]]T`dc`ddcLTLT``cb\cJ\ccd[JJRJbbcXcbcJ\_RYcddddcc[_cHXcdXXZ_Z_dd_Z__dddV__W_Y___ZXddESSX^[[dZ\d[[ZWFUZ^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
37 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 1:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
38 TCTCAGATGAGCATGCAGCAGCCCAGACTCGCCCCACGCAGTTTGCCAACCACAAGGCCATCCTCGGCCTGTCAGCCTGCCCCTCCCTCCCTCACCAGCTAGCCTCCTATGCCGCGGTAGGGGGCTCAAAGAGATTCAGACACAGCCACGTAATCATGTTACTTGCCCATTCCCCCCTCCCTCCTCCTCCTCTCCCCCCCTCTCTTCCCCTCTCCCCTCCCCTCCTCCCCTCCTGTCCCTTATACACATC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
39 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
40 \KK[\]]]_____X__bbdd_ddJJJUbWLJJbdbdJ]cbb]__deeeedddcddTTJ`bdeZLbJ]ddJJba`LLT`JJbcbJS[[J\cd\bcdd_J_XcYcJSZ_>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>