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Uploaded v0.36.2 (adds support for compressed fastq inputs)
author pjbriggs
date Fri, 24 Feb 2017 05:12:32 -0500
parents f80107cdc406
children 6eeacf19a38e
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5:f80107cdc406 6:141bba0e9a77
56 ======= 56 =======
57 57
58 ========== ====================================================================== 58 ========== ======================================================================
59 Version Changes 59 Version Changes
60 ---------- ---------------------------------------------------------------------- 60 ---------- ----------------------------------------------------------------------
61 0.36.2 - Support fastqsanger.gz datatype. If fastqsanger.gz is used as input
62 the output will also be fastqsanger.gz.
63 - Use $_JAVA_OPTIONS to customize memory requirements.
61 0.36.1 - Reimplement to work with bioconda Trimmomatic 0.36 (toolshed version 64 0.36.1 - Reimplement to work with bioconda Trimmomatic 0.36 (toolshed version
62 is still supported for now). 65 is still supported for now).
63 0.36.0 - Update to Trimmomatic 0.36. 66 0.36.0 - Update to Trimmomatic 0.36.
64 0.32.4 - Add support for ``AVGQUAL`` and ``MAXINFO`` operations. 67 0.32.4 - Add support for ``AVGQUAL`` and ``MAXINFO`` operations.
65 0.32.3 - Add support for FASTQ R1/R2 pairs using dataset collections (input 68 0.32.3 - Add support for FASTQ R1/R2 pairs using dataset collections (input
78 0.0.2 - Updated ILLUMINACLIP option to use standard adapter sequences (requires 81 0.0.2 - Updated ILLUMINACLIP option to use standard adapter sequences (requires
79 the trimmomatic_adapters.loc file; sample version is supplied) plus 82 the trimmomatic_adapters.loc file; sample version is supplied) plus
80 cosmetic updates to wording and help text for some options. 83 cosmetic updates to wording and help text for some options.
81 0.0.1 - Initial version 84 0.0.1 - Initial version
82 ========== ====================================================================== 85 ========== ======================================================================
86
87
88 Credits
89 =======
90
91 This wrapper has been developed and is maintained by Peter Briggs (@pjbriggs).
92 Peter van Heusden (@pvanheus) and Marius van den Beek (@mvdbeek) contributed
93 support for gz compressed FastQ files.
83 94
84 95
85 Developers 96 Developers
86 ========== 97 ==========
87 98