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Updated for Trimmomatic 0.39 and adds quality score options.
author pjbriggs
date Thu, 02 Mar 2023 15:24:24 +0000
parents d94aff5ee623
children 9a38087e3bfd
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14:d94aff5ee623 15:32f1f56bd970
69 ======= 69 =======
70 70
71 ========== ====================================================================== 71 ========== ======================================================================
72 Version Changes 72 Version Changes
73 ---------- ---------------------------------------------------------------------- 73 ---------- ----------------------------------------------------------------------
74 0.39 - Update to Trimmomatic 0.39.
74 0.38.1 - Bug fix: add dependency on ``coreutils`` so that ``readlink -e`` is 75 0.38.1 - Bug fix: add dependency on ``coreutils`` so that ``readlink -e`` is
75 supported across both Linux and MacOS platforms. 76 supported across both Linux and MacOS platforms.
76 0.38.0 - Update to Trimmomatic 0.38. 77 0.38.0 - Update to Trimmomatic 0.38.
77 0.36.6 - Added trimlog and log outputs; add support for ``fastqillumina`` 78 0.36.6 - Added trimlog and log outputs; add support for ``fastqillumina``
78 and ``fastqsolexa`` input types 79 and ``fastqsolexa`` input types
119 support for gz compressed FastQ files. Charles Girardot (@cgirardot) and 120 support for gz compressed FastQ files. Charles Girardot (@cgirardot) and
120 Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP. 121 Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP.
121 Matthias Bernt (@bernt-matthias) added log and trimlog output. 122 Matthias Bernt (@bernt-matthias) added log and trimlog output.
122 Nicola Soranzo (@nsoranzo) suggested using coreutils to enable cross-platform 123 Nicola Soranzo (@nsoranzo) suggested using coreutils to enable cross-platform
123 support across Linux and MacOS. 124 support across Linux and MacOS.
125 Cristóbal Gallardo (@gallardoalba) updated Trimmomatic up to version 0.39.
124 126
125 Developers 127 Developers
126 ========== 128 ==========
127 129
128 This tool is developed on the following GitHub repository: 130 This tool is developed on the following GitHub repository: