Mercurial > repos > pjbriggs > trimmomatic
diff README.rst @ 4:14d05f2d511d draft
Version that supports Trimmomatic 0.36.
| author | pjbriggs |
|---|---|
| date | Thu, 14 Jul 2016 09:17:38 -0400 |
| parents | f8a9a5eaca8a |
| children | f80107cdc406 |
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--- a/README.rst Wed Sep 23 08:59:23 2015 -0400 +++ b/README.rst Thu Jul 14 09:17:38 2016 -0400 @@ -33,15 +33,15 @@ <tool file="trimmomatic/trimmomatic.xml" /> -You will also need to install trimmomatic 0.32: +You will also need to install trimmomatic 0.36: -- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip +- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip The tool wrapper uses the following environment variables in order to find the appropriate files: - ``TRIMMOMATIC_DIR`` should point to the directory holding the - ``trimmomatic-0.32.jar`` file + ``trimmomatic-0.36.jar`` file - ``TRIMMOMATIC_ADAPTERS_DIR`` should point to the directory holding the adapter sequence files (used by the ``ILLUMINACLIP`` option). @@ -58,6 +58,8 @@ ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +0.36.0 - Update to Trimmomatic 0.36. +0.32.4 - Add support for ``AVGQUAL`` and ``MAXINFO`` operations. 0.32.3 - Add support for FASTQ R1/R2 pairs using dataset collections (input can be dataset collection, in which case tool also outputs dataset collections) and improve order and naming of output files.