diff README.rst @ 14:d94aff5ee623 draft

Version 0.38.1: add coreutils as dependency to fix tool issues with 'readlink -e' across platforms.

--- a/README.rst	Mon Jul 08 07:09:10 2019 -0400
+++ b/README.rst	Thu Mar 26 04:52:47 2020 -0400
@@ -46,9 +46,9 @@
 
     <tool file="trimmomatic/trimmomatic.xml" />
 
-You will also need to install trimmomatic 0.36:
+You will also need to install trimmomatic 0.38:
 
-- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip
+- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.38.zip
 
 The tool wrapper uses the following environment variables in order to find the
 appropriate files:
@@ -71,6 +71,8 @@
 ========== ======================================================================
 Version    Changes
 ---------- ----------------------------------------------------------------------
+0.38.1     - Bug fix: add dependency on ``coreutils`` so that ``readlink -e`` is
+             supported across both Linux and MacOS platforms.
 0.38.0     - Update to Trimmomatic 0.38.
 0.36.6     - Added trimlog and log outputs; add support for ``fastqillumina``
              and ``fastqsolexa`` input types
@@ -117,6 +119,8 @@
 support for gz compressed FastQ files. Charles Girardot (@cgirardot) and
 Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP.
 Matthias Bernt (@bernt-matthias) added log and trimlog output.
+Nicola Soranzo (@nsoranzo) suggested using coreutils to enable cross-platform
+support across Linux and MacOS.
 
 Developers
 ==========