Mercurial > repos > pjbriggs > trimmomatic
diff README.rst @ 14:d94aff5ee623 draft
Version 0.38.1: add coreutils as dependency to fix tool issues with 'readlink -e' across platforms.
author | pjbriggs |
---|---|
date | Thu, 26 Mar 2020 04:52:47 -0400 |
parents | 898b67846b47 |
children | 32f1f56bd970 |
line wrap: on
line diff
--- a/README.rst Mon Jul 08 07:09:10 2019 -0400 +++ b/README.rst Thu Mar 26 04:52:47 2020 -0400 @@ -46,9 +46,9 @@ <tool file="trimmomatic/trimmomatic.xml" /> -You will also need to install trimmomatic 0.36: +You will also need to install trimmomatic 0.38: -- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip +- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.38.zip The tool wrapper uses the following environment variables in order to find the appropriate files: @@ -71,6 +71,8 @@ ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +0.38.1 - Bug fix: add dependency on ``coreutils`` so that ``readlink -e`` is + supported across both Linux and MacOS platforms. 0.38.0 - Update to Trimmomatic 0.38. 0.36.6 - Added trimlog and log outputs; add support for ``fastqillumina`` and ``fastqsolexa`` input types @@ -117,6 +119,8 @@ support for gz compressed FastQ files. Charles Girardot (@cgirardot) and Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP. Matthias Bernt (@bernt-matthias) added log and trimlog output. +Nicola Soranzo (@nsoranzo) suggested using coreutils to enable cross-platform +support across Linux and MacOS. Developers ==========