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diff trimmomatic.xml @ 14:d94aff5ee623 draft

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Version 0.38.1: add coreutils as dependency to fix tool issues with 'readlink -e' across platforms.
author pjbriggs
date Thu, 26 Mar 2020 04:52:47 -0400
parents 898b67846b47
children 32f1f56bd970
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--- a/trimmomatic.xml	Mon Jul 08 07:09:10 2019 -0400
+++ b/trimmomatic.xml	Thu Mar 26 04:52:47 2020 -0400
@@ -1,10 +1,16 @@
-<tool id="trimmomatic" name="Trimmomatic" version="0.38.0">
+<tool id="trimmomatic" name="Trimmomatic" version="0.38.1">
   <description>flexible read trimming tool for Illumina NGS data</description>
   <macros>
     <import>trimmomatic_macros.xml</import>
   </macros>
   <requirements>
     <requirement type="package" version="0.38">trimmomatic</requirement>
+    <!--
+	Coreutils required for 'readlink -e' work across platforms
+	See similar fix for snpSift
+	https://github.com/galaxyproject/tools-iuc/commit/b5e2080a7afdea9fa476895693b6115824c6fbb9
+    -->
+    <requirement type="package" version="8.25">coreutils</requirement>
   </requirements>
   <command detect_errors="aggressive"><![CDATA[
   @CONDA_TRIMMOMATIC_JAR_PATH@ &&