Mercurial > repos > pjbriggs > trimmomatic

diff package_trimmomatic.sh @ 3:f8a9a5eaca8a draft

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Updated to version 0.32.3: add support for FASTQ pairs (dataset collections)
author pjbriggs
date Wed, 23 Sep 2015 08:59:23 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/package_trimmomatic.sh	Wed Sep 23 08:59:23 2015 -0400
@@ -0,0 +1,24 @@
+#!/bin/sh
+#
+# Package Trimmomatic tool files into tgz file for upload to
+# Galaxy toolshed
+#
+TGZ=trimmomatic.tgz
+if [ -f $TGZ ] ; then
+    echo $TGZ: already exists, please remove >&2
+    exit 1
+fi
+tar cvzf $TGZ \
+    README.rst \
+    trimmomatic.xml \
+    trimmomatic.sh \
+    tool_dependencies.xml \
+    test-data
+if [ -f $TGZ ] ; then
+    echo Created $TGZ
+else
+    echo Failed to created $TGZ >&2
+    exit 1
+fi
+##
+#