view test-data/Illumina_SG_R2.fastqillumina @ 15:32f1f56bd970 draft

Updated for Trimmomatic 0.39 and adds quality score options.

@MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 2:N:0:NAAGGCGATAGATCGC
GCCGATATGCAGATGCCGTTGATTGCTGCCAGCATAGCAGCCATTGCCGGCATATCCTTTGTGACTGTGCGCCGACGCAAGAAGGCGGCCCAGATAACCTAGCCCAGAAACGATACGGCGTCTCTACCCTCATCTGTTATGCTGATCCAGTGATTCTTGCCTACCTTCTTTACGGTGATGTAATGCCAGTCGTTGGCAAGCGGGTCTATAATATTCTTGGCGAGGCTTGCAAACCTGGCCTGCGAGTGGT
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^^`^^`aacccccccceedddeghhhhgghhgheghhgggegghhhhhgggegghhhhhheeegghhgfcdgg``dggggeggggc\daadddddeeeeddddbdeeddeeeWI^^``^Z]cdddeeeeI^W`dbedeeeeeed`dddbeeebdddeeeeeedded`bddb^b``bdeddded^O^d`b```dd``bdd`IMSWMFOIPYY`^b``^bbYYSFFSFOOFWY^`W^dBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 2:N:0:NAAGGCGATAGATCGC
GATGACATCAGCACAGGTTCCGCTTCCGCTGTCGCAACGACGTGGCTGCCATCGATTATATTCAATTCTGAGTGCTGCCGTAGGGCTAGATGTAAGACTCACGTTCGGCGACCAGATTAGTCGGTAGTGGCATGTGACTCCCCGTTGTAGACTACGATTAGACCCATCTCTCTGGCCACAGCTAACTCGCTCAACTCTCATCCCTCCTGGGGTATCTACCAGCGATACGCGTAGAACTCGTGCCTCATGC
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^^^^^aaaccccccccfeefffgggghggggggghgggghgabddgeeggghhgeggghhhhhhhgheafefegggghgd_dddggeeggee^begggggfffffffffffffffffffdbfffZddYbdfff^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 2:N:0:NAAGGCGATAGATCGC
GAATATAGAAACGGGAGTATAGTGGTAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGNNCGCCGCTAAGACTGCCGTCAAATTCCTGAGCGGTAGTGATGCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGGGGGCGCCGGCACATTCAAAAAAAAAAAACAGGAAAATGACATAGGCGTGTGTGA
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^^```aaacccccdccffbeffggheegggBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBUU^\BBSUU__dddfbffb]bd[dfddfdfbdfdffffWW[^P^b^dfbd^ddb^bb^bbdffbffbfbW^bb`b[``FQQQW]IOIPbY^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 2:N:0:NAAGGCGATAGATCGC
GTCCACGTGAAATCCCGAGCGTCCCTCTCCCTCCCGAGAACCCGGTCTATATCCCACGATTTTTGACCGAACAAGGATTGACCTCATCCAACTCCGAAGCCCGCCGCCTACTTTCCCAAGGCGCGATAAAGATTGATGGAACCCCGCCCAAGGCTGACGAAATCCCCGCCAACGAACTGTCGGGCCGACCCATTCAAGTGGGGAAAAAAACCTTTCCCCGGGTTGACAAACCGCCAAACAACCTCACCAA
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^^^^Xa^^^`cX^accddccccgggggegegeegggggggggdgg]bdfggefggfgg\eggggbJbfdabb[be_KSbe_beaeeeece^aSac__cH]bdUaaHHMHMY```dd^`^`BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 2:N:0:NAAGGCGATAGATCGC
TCTCCTCAGTACGGGGGAGGAGGTTCGCTCGGCGGACGTGCGGCCCTACGCCAGACTCTACCACATGGTTCAGCAGGAGCTGGAGCACCGCGCTGTGTCCGGGGACTGGGAATACACCATCAGCCCCGGCGAGGAGTGGCAAGAGACGGAGCCTCTGCAACCAGCAGAGGTTGCCAAGCTGGACTATCACAGCTACGTCACCAGACGCTTCATGAAGGTCACCCAGTCTGACCCTGTGAACCAGGCCGGG
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`^^`^aaaccccccccffffffgdeggfdggghgdgggggcgadgfeeedffcddcfffffdffddbd^dfbdfdfffbdddffbddffScZZS`ffffffW]ff`^dfffddfddfffbffdfdffffcW[``cdbdbdff^bbbYWbbFFWYbY^bbdI^HObbOYI^YbY^bbbW^bbdbXIYYbbbb^bIYYMbdffdbXXbSFHHMOOIYbY^IPOYbbBBBBBBBBBBBBBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 2:N:0:NAAGGCGATAGATCGC
GCGTGGATTTGATTCGGTTTATGGGGCGCGGCCGCTGAGGCGGGTCATTCAGACGGAGATTGAGAATCCGCTAGCGGATAAGATTTTGCGGGGGGAGTTGGCGGAGGGCGATCGCTTGATGCTTGATTATGGAGGGGAGGGGGAGAAGATAGGTTTTACGAAAATAGAGGCGGAGGGGTCGGCGGCATAGAGGGTAATTTTTTGGGTTTTTTTCTGTGTCTTATACACAACTGAACGTGCCGACGAGCGG
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^^^^^_^accccccccedddeeghhgdggggcgggggdggggggW`ceeeceecPcZ]PKZZZZRaKRaZZIYaZPZFFOYYOIPY`IYZ]ccFSFWMYY``]cQQ]c`]FFOMMOW^IY`IP^YIO^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 2:N:0:NAAGGCGATAGATCGC
GAGTTACTATTACAGAGTGGAGCTAATGTACTGGCAGTTGACTGCAAAAGAAATGCTCCAATTCATGTTGCATGTGCAAATATGAGCTTAGAGTGTTTAAAGATAATTTTGTGCCACAAAAAATGCAACCCAAACCAACAAAATGCAGTGGGAGACACTCCACTCCACACCTTATGCAGTTTGGGGACTTGTGATATGAGAATACTACCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGAACAAG
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^^^^^aaaccccccccfbefefhhhhhgeghhhhghgef\dgghfhhhheghgcfgfggghghg\bfgffgegggegefggegN`bceff^ed^bceeggggghhgeggh]bdcfeggggggggceggegggee`eeffffffdcdf]]c`bbZ^dff]bdd`]`d`bbdd^YbYYbbYYYbYbd[b[XbY^b^I^bddbbbIYb^b^dY^YbYbYbbbbdY^bPIOIPPMWbHQ^FSW]fBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 2:N:0:NAAGGCGATAGATCGC
GTATTGCTGGCACCATCAGTCACCGTGTAGTGTATTCTATCGATTCCGTCACGCTGGCCCTTGAGCGTGCCCGAATCATACGTTATGGTGGTACCTGATACCGTGGCACTAGTGCCGTCGGTGTCTGCGCCATCCGTACGGTCGAACACCACCACGAGGGTATCGGCGTCCTGGTTTGCGTCGGGGATGCGGTCACCCTCTAAAAGATTTATGGAGGTCGTCTCTTGTGTCTGGGCCGGGGGGAAGATGT
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^^^^^aaaccccccccffffffhhghheggghgghegfgffgghghhcdeegde_ceghhghhhfg`bcbeeggghghhghgfgggafefddggggegeeggcecbdffeffefff_caddddfb]bddffffffdO^bcfffc]ddQbdWbdfdd[]]]HYbddfc`FSQWbdY^XbbSWQW]FS[HOY]FOSHP^dIWYPbb^^HYbbddbbIIWHOTSW^bIY^YIOPOIYbbBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 2:N:0:TAAGGCGATAGATCGC
GGCCAACACTGTGGTCACTATCTCTGGCACTGGTCTGCTACCACATGGAGTTGACACCGGAGACCCAATCACCACAGCAACAGTGTGGATTGACCACACCCCCTGCACCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCCGTGGGCGCCGCATCATTAAAAAAAAAAAAAAAAAACATAACTCTCAAACGCGAATAGAGCAAGAAACAGACAGCTAAAGTACAAACAAT
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TT[^^^^^cccaaccaeeeeeebgghhgghhhhhhhgfgghhhhggfghhgegghhhhgggbcghhhgeeghhhhhbeeghgdbfbfdghg\eggggggggggeZeeeeecceeeeeeedeeeededace`dd`dd_ddcc]cccWWOY^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 2:N:0:TAAGGCGATAGATCGC
GAGGGGAGGAGGGGAAGGGAGAGGGGAAGAGAGGAGAGGAGAGGAGGAGGAGAGAAGGGGGAATGAGCAAGTAACATAATTACATAGCTGTGTCTGAATCTCTTTGAGCACCCTACCTCGGCATAGGAGGCTAGCTGGTGAGGGAGGGAGGGGCAGACTGACAGGCCGAGGATGGCCTTGTGGTTGGCAAACTCCGTGGGGCGAGTCTGGGCTGCTGCATGCGCATCTGAGACTGGCTCTTGTACACATC
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^^^^^_X_a^a^aaaadddea__ddgdb^aeLbd_ccdgKTJTbK]_JbdJ[^\dLbedbdggcacK^ceeKScccaeZ\aZZaacZcKaS\adddddbaKKaaZ^b^bddddIZZbY`b^bZ^bbY`ddd^dW`bdYOY`^``W`SM^^W^WQSWHWY`bddd^dHSZ^Z^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB