Mercurial > repos > pjbriggs > trimmomatic

view test-data/trimmomatic_pe_r2_unpaired_out1_clip.fastq @ 15:32f1f56bd970 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated for Trimmomatic 0.39 and adds quality score options.
author pjbriggs
date Thu, 02 Mar 2023 15:24:24 +0000
parents 415a165d92bb
children
line wrap: on
line source

@MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 2:N:0:NAAGGCGATAGATCGC
GAGTTACTATTACAGAGTGGAGCTAATGTACTGGCAGTTGACTGCAAAAGAAATGCTCCAATTCATGTTGCATGTGCAAATATGAGCTTAGAGTGTTTAAAGATAATTTTGTGCCACAAAAAATGCAACCCAAACCAACAAAATGCAGTGGGAGACACTCCACTCCACACCTTATGCAGTTTGGGGACTTGTGATATGAGAATACTAC
+
?????BBBDDDDDDDDGCFGFGIIIIIHFHIIIIHIHFG=EHHIGIIIIFHIHDGHGHHHIHIH=CGHGGHFHHHFHFGHHFH/ACDFGG?FE?CDFFHHHHHIIHFHHI>CEDGFHHHHHHHHDFHHFHHHFFAFFGGGGGGEDEG>>DACC;?EGG>CEEA>AEACCEE?:C::CC:::C:CE<C<9C:?C?*?CEECCC*:C?C?
@MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 2:N:0:TAAGGCGATAGATCGC
GAGGGGAGGAGGGGAAGGGAGAGGGGAAGAGAGGAGAGGAG
+
?????@9@B?B?BBBBEEEFB@@EEHEC?BF-CE@DDEH,5