Mercurial > repos > pjbriggs > trimmomatic
view trimmomatic_macros.xml @ 16:9a38087e3bfd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/packages/trimmomatic commit ab36e4731731f12cce0e7d7cc3b50ba6a0bab1ef
author | iuc |
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date | Sun, 14 Jan 2024 11:00:33 +0000 |
parents | 32f1f56bd970 |
children | b9aaed85cbd1 |
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<macros> <!-- Set the path for the trimmomatic JAR and data files Based on https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/snpsift/snpSift_macros.xml#L13 --> <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token> <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token> <token name="@TOOL_VERSION@">0.39</token> <token name="@VERSION_SUFFIX@">1</token> </macros>