Mercurial > repos > pjbriggs > weeder2
comparison weeder2_wrapper.xml @ 4:89315bdc1a8c draft default tip
Uploaded tool version 2.0.3.
| author | pjbriggs |
|---|---|
| date | Wed, 26 Sep 2018 10:12:56 -0400 |
| parents | f19e18ab01b1 |
| children |
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| 3:f19e18ab01b1 | 4:89315bdc1a8c |
|---|---|
| 1 <tool id="motiffinding_weeder2" name="Weeder2" version="2.0.2"> | 1 <tool id="motiffinding_weeder2" name="Weeder2" version="2.0.3"> |
| 2 <description>Motif discovery in sequences from coregulated genes of a single species</description> | 2 <description>Motif discovery in sequences from coregulated genes of a single species</description> |
| 3 <macros> | |
| 4 <import>weeder2_macros.xml</import> | |
| 5 </macros> | |
| 6 <requirements> | 3 <requirements> |
| 7 <requirement type="package" version="2.0">weeder</requirement> | 4 <requirement type="package" version="2.0">weeder</requirement> |
| 8 </requirements> | 5 </requirements> |
| 9 <command><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 10 @CONDA_WEEDER2_FREQFILES_PATH@ && | |
| 11 bash $__tool_directory__/weeder2_wrapper.sh | 7 bash $__tool_directory__/weeder2_wrapper.sh |
| 12 $sequence_file $species_code ${species_code.fields.path} | 8 $sequence_file $species_code ${species_code.fields.path} |
| 13 $output_motifs_file $output_matrix_file | 9 $output_motifs_file $output_matrix_file |
| 14 $strands | 10 $strands |
| 15 #if $chipseq.use_chipseq | 11 #if $chipseq.use_chipseq |