# HG changeset patch
# User plus91-technologies
# Date 1402134997 14400
# Node ID 0a44dd5fda6dfd4812861ab7da02f28f626b7fd4
# Parent 9bb68b70c3bf1a4f6a3cde38d03cb03c87b283de
Deleted selected files
diff -r 9bb68b70c3bf -r 0a44dd5fda6d softsearch_wrapper.xml
--- a/softsearch_wrapper.xml Sat Jun 07 05:22:20 2014 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,56 +0,0 @@
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- softsearch
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- for structure variation
- #if $source.index_source=="history"
- samtools index $bam_file ; samtools faidx $source.history_fasta_file ; $inc | --prefix/SoftSearch.pl -l $min_length_soft_clip -q $min_map_quality -r $min_depth_soft_clip_loc -m $min_no_discordant_read -s $no_sd_consider_discordant -b $bam_file -f $source.history_fasta_file -o $out_file1
- #else
- samtools index $bam_file ; samtools faidx $source.ref_fasta.fields.path ; $inc | --prefix/SoftSearch.pl -l $min_length_soft_clip -q $min_map_quality -r $min_depth_soft_clip_loc -m $min_no_discordant_read -s $no_sd_consider_discordant -b $bam_file -f $source.ref_fasta.fields.path -o $out_file1
- #end if
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diff -r 9bb68b70c3bf -r 0a44dd5fda6d tool_dependencies.xml
--- a/tool_dependencies.xml Sat Jun 07 05:22:20 2014 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
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