Mercurial > repos > portiahollyoak > breakdancer_max
comparison breakdancermax.xml @ 5:c2bb6aa52c74 draft
planemo upload for repository https://github.com/portiahollyoak/Tools commit 65ddf081d2f1a76bc4d6d91f01ab72667b9e1549-dirty
| author | portiahollyoak |
|---|---|
| date | Mon, 23 May 2016 06:06:09 -0400 |
| parents | 8fee2dac93a4 |
| children | e7f2d8b8069e |
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| 4:eb2770895305 | 5:c2bb6aa52c74 |
|---|---|
| 63 label="Print out Allele Frequencing column (Default= No)"/> | 63 label="Print out Allele Frequencing column (Default= No)"/> |
| 64 <param name="output_score_filter" type="integer" value="30" label="Output Score filter"/> | 64 <param name="output_score_filter" type="integer" value="30" label="Output Score filter"/> |
| 65 </inputs> | 65 </inputs> |
| 66 <outputs> | 66 <outputs> |
| 67 <data name="results_bed" type="data" format="bed" label="${sample_name} Breakdancer BED file containing SVs and supporting reads "/> | 67 <data name="results_bed" type="data" format="bed" label="${sample_name} Breakdancer BED file containing SVs and supporting reads "/> |
| 68 <data name="results_stdout" type="data" format="bed" label="${sample_name} Breakdancer summary"/> | 68 <data name="breakdancer_stdout" type="data" format="bed" label="${sample_name} Breakdancer summary"/> |
| 69 </outputs> | 69 </outputs> |
| 70 <tests> | 70 <tests> |
| 71 <test> | 71 <test> |
| 72 <param name="input_file" value="X_Hum1.bwa.bam" ftype="bam"/> | 72 <param name="input_file" value="X_Hum1.bwa.bam" ftype="bam"/> |
| 73 <param name="mean" value="227"/> | 73 <param name="mean" value="227"/> |