Mercurial > repos > portiahollyoak > breakdancer_max

changeset 1:021a0f7ab3f6 draft

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planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
author portiahollyoak
date Fri, 20 May 2016 04:56:25 -0400
parents f65530d07350
children 2de4be065de4
files test-data/README test-data/breakdancer_config_X_100000
diffstat 2 files changed, 5 insertions(+), 2 deletions(-) [+]
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line diff
--- a/test-data/README	Tue May 17 04:35:44 2016 -0400
+++ b/test-data/README	Fri May 20 04:56:25 2016 -0400
@@ -1,10 +1,12 @@
 This is a collection of test data to be used with breakdancer. It consists of:
 
 an alignment file
-a output bed file
+an output bed file
 
-The details for the alignment file to be put into breakdancer are:
+The input variables for the alignment file to be put into breakdancer are:
 mean:227
 standard deviation:98
 read length:125	
 sample:X_10000000_Hum1
+
+All other variables are to be kept as defaults.
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/breakdancer_config_X_100000	Fri May 20 04:56:25 2016 -0400
@@ -0,0 +1,1 @@
+map:../HUM_BAM_dm6fasta/Hum1.bwa.bam	mean:227	std:98	readlen:125	sample:HUM1	exe:samtools view