Mercurial > repos > portiahollyoak > breakdancer_max

changeset 3:8fee2dac93a4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/portiahollyoak/Tools commit f09b05c40adb6e529fc461466ee67bf41c3a552f
author portiahollyoak
date Mon, 23 May 2016 05:19:22 -0400
parents 2de4be065de4
children eb2770895305
files breakdancermax.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/breakdancermax.xml	Fri May 20 04:59:47 2016 -0400
+++ b/breakdancermax.xml	Mon May 23 05:19:22 2016 -0400
@@ -33,7 +33,7 @@
         $copy_number_bam
         $allele_freq
         -y "$output_score_filter"
-         output_config_file &&
+         output_config_file > "$breakdancer_stdout" &&
         mv "$sample_name" "$results_bed"
     ]]></command>
     <inputs>
@@ -64,7 +64,8 @@
         <param name="output_score_filter" type="integer" value="30" label="Output Score filter"/>
     </inputs>
     <outputs>
-        <data name="results_bed" type="data" format="bed" help="BED file containing SVs and supporting reads" label="${sample_name}"/>
+        <data name="results_bed" type="data" format="bed" label="${sample_name} Breakdancer BED file containing SVs and supporting reads "/>
+        <data name="results_stdout" type="data" format="bed" label="${sample_name} Breakdancer summary"/>
     </outputs>
     <tests>
         <test>