Mercurial > repos > portiahollyoak > gff_feature_colours
comparison gff_feature_colours.xml @ 1:4f0fb855276c draft default tip
planemo upload for repository https://github.com/portiahollyoak/Tools commit 5f5802314b55f52ea4b3f9f515ec46a5a770696d-dirty
| author | portiahollyoak |
|---|---|
| date | Thu, 26 May 2016 11:07:21 -0400 |
| parents | f562c252b285 |
| children |
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| 0:f562c252b285 | 1:4f0fb855276c |
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| 29 </param> | 29 </param> |
| 30 <param name="feature_colour" type="color" label="Feature Colour" value="#ff00ff"/> | 30 <param name="feature_colour" type="color" label="Feature Colour" value="#ff00ff"/> |
| 31 </repeat> | 31 </repeat> |
| 32 </inputs> | 32 </inputs> |
| 33 <outputs> | 33 <outputs> |
| 34 <data format="input" name="output" label="Add feature colours to ${input.element_identifier}" /> | 34 <data format_source="input" name="output" label="Add feature colours to ${input.element_identifier}" /> |
| 35 </outputs> | 35 </outputs> |
| 36 <tests> | |
| 37 <test> | |
| 38 <param name="input" value="test-gff.gff" ftype="gff"/> | |
| 39 <param name="feat_0|feature" value="Idefix" /> | |
| 40 <param name="feat_0|feature_colour" value="#ff0000"/> | |
| 41 <param name="feat_1|feature" value="INE-1" /> | |
| 42 <param name="feat_1|feature_colour" value="#00ff00"/> | |
| 43 <output name="output" file="test-gff-colours.gff" ftype="gff"/> | |
| 44 </test> | |
| 45 </tests>> | |
| 36 <help><![CDATA[ | 46 <help><![CDATA[ |
| 37 Description | 47 Description |
| 38 ------------ | 48 ------------ |
| 39 | 49 |
| 40 The Add Feature Colours tool allows the user to assign a colour to unique features found in the 3rd column of a GFF file for visualisation in a genome browser. It works by allowing the user to match unique features to a colour and then it will add the assigned colour of that feature to the 9th column of the feature line. This will then be interpreted by the genome browser, and the feature will appear in its assigned colour. | 50 The Add Feature Colours tool allows the user to assign a colour to unique features found in the 3rd column of a GFF file for visualisation in a genome browser. It works by allowing the user to match unique features to a colour and then it will add the assigned colour of that feature to the 9th column of the feature line. This will then be interpreted by the genome browser, and the feature will appear in its assigned colour. |