Mercurial > repos > portiahollyoak > temp
comparison temp.xml @ 7:e96a0d0f8dd6 draft
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
author | portiahollyoak |
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date | Mon, 25 Apr 2016 14:20:48 -0400 |
parents | 50c432ca4d1e |
children | f60f60cf4a34 |
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6:50c432ca4d1e | 7:e96a0d0f8dd6 |
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20 mv "$alignment.element_identifier".insertion.bp.bed $insertion_bed && | 20 mv "$alignment.element_identifier".insertion.bp.bed $insertion_bed && |
21 mv "$alignment.element_identifier".insertion.refined.bp $insertion_bed_refined && | 21 mv "$alignment.element_identifier".insertion.refined.bp $insertion_bed_refined && |
22 mv "$alignment.element_identifier".insertion.refined.bp.summary $insertion_summary && | 22 mv "$alignment.element_identifier".insertion.refined.bp.summary $insertion_summary && |
23 mv "$alignment.element_identifier".absence.refined.bp.summary $absence_summary && | 23 mv "$alignment.element_identifier".absence.refined.bp.summary $absence_summary && |
24 zip archive.zip *insertion* *excision* *absence* && | 24 zip archive.zip *insertion* *excision* *absence* && |
25 mv $archive | 25 mv archive.zip $archive |
26 ]]></command> | 26 ]]></command> |
27 <inputs> | 27 <inputs> |
28 <param format="bam" name="alignment" type="data" label="Alignment bam file"/> | 28 <param format="bam" name="alignment" type="data" label="Alignment bam file"/> |
29 <param format="twobit" name="reference2bit" type="data" label="Reference twobit file"/> | 29 <param format="twobit" name="reference2bit" type="data" label="Reference twobit file"/> |
30 <param format="fasta" name="consensus_te_seqs" type="data" label="Consensus TE Seqs fasta file"/> | 30 <param format="fasta" name="consensus_te_seqs" type="data" label="Consensus TE Seqs fasta file"/> |