Mercurial > repos > portiahollyoak > temp
diff test-data/README @ 0:28d1a6f8143f draft
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
| author | portiahollyoak |
|---|---|
| date | Mon, 25 Apr 2016 13:08:56 -0400 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/README Mon Apr 25 13:08:56 2016 -0400 @@ -0,0 +1,7 @@ +This is a small simulated dataset for testing if TEMP is properly installed and demonstrating how it works. + +10 TE insertions and 5 TE excisions were generated in the chr2L:2000000-3000000 region of the Drosophila Melanogaster Reference Genome (dm3), and pair-end Illumina reads were simulated with insert size 500, read length 90 and error-rate of 0.0005. Those reads were mapped to the dm3 reference genome and the alignments were in the file "test_chromosome.sorted.bam". + +The 10 simulated insertions and 5 excisions were listed in the file "test_chromosome.sites". +The concensus sequences for those 10 TEs were in the file "test_concensus.fa". +The annotated TE insertions in the reference genome were listed in the file "test_TE_annotation.bed".