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planemo upload for repository https://github.com/portiahollyoak/Tools commit 2bc118a40da59fc3a2b8ee9ed04152c8effff94f
author | portiahollyoak |
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date | Tue, 26 Apr 2016 06:27:41 -0400 |
parents | 28d1a6f8143f |
children |
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This is a small simulated dataset for testing if TEMP is properly installed and demonstrating how it works. 10 TE insertions and 5 TE excisions were generated in the chr2L:2000000-3000000 region of the Drosophila Melanogaster Reference Genome (dm3), and pair-end Illumina reads were simulated with insert size 500, read length 90 and error-rate of 0.0005. Those reads were mapped to the dm3 reference genome and the alignments were in the file "test_chromosome.sorted.bam". The 10 simulated insertions and 5 excisions were listed in the file "test_chromosome.sites". The concensus sequences for those 10 TEs were in the file "test_concensus.fa". The annotated TE insertions in the reference genome were listed in the file "test_TE_annotation.bed".