# HG changeset patch
# User mvdbeek
# Date 1477481085 14400
# Node ID 6e02b9179a245595f0751980c1e387a30755c75b
# Parent  e541089245baa2fc6dc0bdadb3703662daa268b5
planemo upload for repository https://github.com/portiahollyoak/Tools commit 350d1df132e1298f069c33f8961a06fc4a194887

diff -r e541089245ba -r 6e02b9179a24 temp.xml
--- a/temp.xml	Thu Sep 01 11:11:59 2016 -0400
+++ b/temp.xml	Wed Oct 26 07:24:45 2016 -0400
@@ -1,15 +1,9 @@
-<tool id ="run_TEMP" name="TEMP" version="0.2.2">
+<tool id ="run_TEMP" name="TEMP" version="0.2.2.0">
     <description></description>
     <requirements>
-        <!-- The following are classical toolshed packages and should be removed
-        once conda is deemed stable-->
-        <requirement type="package" version="1.6.922">bioperl</requirement>
-        <requirement type="package" version="0.7.12">bwa</requirement>
-        <requirement type="package" version="2.24">bedtools</requirement>
-        <!-- end of toolshed package definitions -->
         <requirement type="package" version="1.6.924">perl-bioperl</requirement>
         <requirement type="package" version="0.7.13">bwa</requirement>
-        <requirement type="package" version="2.25.0">bedtools</requirement>
+        <requirement type="package" version="2.26.0gx">bedtools</requirement>
         <requirement type="package" version="324">ucsc-twobittofa</requirement>
         <requirement type="package" version="0.1.19">samtools</requirement>
     </requirements>
diff -r e541089245ba -r 6e02b9179a24 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Sep 01 11:11:59 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="bioperl" version="1.6.922">
-        <repository changeset_revision="52a377d1c8de" name="package_bioperl_1_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="perl" version="5.18.1">
-        <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="bedtools" version="2.24">
-        <repository changeset_revision="3416a1d4a582" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="bwa" version="0.7.12">
-        <repository changeset_revision="6af9b24ddeee" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="samtools" version="0.1.19">
-        <repository changeset_revision="c9bd782f5342" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>