comparison mixomics_blocksplsda.xml @ 5:1ee8d2c20c0a draft

planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 25773bd7a90072f9782df823969b282e4fe29252

4:b0ab97ffc2a1

<tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="0.3.0" profile="16.04" workflow_compatible="true">

    <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description>

    <requirements>
        <requirement type="package" version="6.8">bioconductor-mixomics</requirement>

        #end for
        --sample_metadata_in ${sample_metadata_in}
        --sample_description_col ${sample_description_col}
        --ncomp ${ncomp}
        ${correlation}
        --scheme ${adv.scheme}
        --mode ${adv.mode}
        --maxiter ${adv.maxiter}
        ${adv.scale}
        --init ${adv.init}
        --tol ${adv.tol}
        ${adv.nearzerovar}
        --rdata_out ${rdata_out}
        --sample_metadata_out ${sample_metadata_out}
        --variable_metadata_outdir outdir
        ]]>
    </command>

                <option value="svd.single"         >svd.single</option>
            </param>
            <param name="tol" type="float" value="1e-06" min="0"
                   label="Convergence stopping value"
                   help="[tol]" />
            <param name="nearzerovar" type="boolean" truevalue="-\-nearzerovar" falsevalue="" checked="false"
                   label="Should be set to TRUE in particular for data with many zero values" /> -->
        </section>
    </inputs>

    <outputs>

5:1ee8d2c20c0a

<tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="0.4.0" profile="16.04" workflow_compatible="true">

    <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description>

    <requirements>
        <requirement type="package" version="6.8">bioconductor-mixomics</requirement>

        #end for
        --sample_metadata_in ${sample_metadata_in}
        --sample_description_col ${sample_description_col}
        --ncomp ${ncomp}
        ${correlation}
        ##--scheme ${adv.scheme}
        ##--mode ${adv.mode}
        --maxiter ${adv.maxiter}
        ##${adv.scale}
        --scale ## always activated hidden param
        ##--init ${adv.init}
        ##--tol ${adv.tol}
        ##${adv.nearzerovar}
        --rdata_out ${rdata_out}
        --sample_metadata_out ${sample_metadata_out}
        --variable_metadata_outdir outdir
        ]]>
    </command>

                <option value="svd.single"         >svd.single</option>
            </param>
            <param name="tol" type="float" value="1e-06" min="0"
                   label="Convergence stopping value"
                   help="[tol]" />
            <param name="nearzerovar" type="boolean" truevalue="-\-nearzerovar" falsevalue="" checked="true"
                   label="Should be set to TRUE in particular for data with many zero values" /> -->
        </section>
    </inputs>

    <outputs>