Mercurial > repos > ppericard > mixomics_blocksplsda
comparison mixomics_plotindiv.xml @ 4:b0ab97ffc2a1 draft
planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 0bf5c0745f406f2eca9c708a062c975b1f7ea386
| author | ppericard |
|---|---|
| date | Mon, 09 Mar 2020 11:53:32 -0400 |
| parents | 655d1fbcd3e6 |
| children |
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| 3:0a3c83f2197a | 4:b0ab97ffc2a1 |
|---|---|
| 1 <tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="0.2.0" profile="16.04" workflow_compatible="true"> | 1 <tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="0.3.0" profile="16.04" workflow_compatible="true"> |
| 2 | 2 |
| 3 <description>provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA)</description> | 3 <description>provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA)</description> |
| 4 | 4 |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="package" version="6.8">bioconductor-mixomics</requirement> | 6 <requirement type="package" version="6.8">bioconductor-mixomics</requirement> |
| 7 <requirement type="package" version="2.0">r-argparse</requirement> | 7 <requirement type="package" version="2.0">r-argparse</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 | 9 |
| 10 <stdio> | 10 <stdio> |
| 11 <!-- <exit_code range="1:" level="fatal" /> --> | 11 <!-- <exit_code range="1:" level="fatal" /> --> |
| 12 </stdio> | 12 </stdio> |
| 13 | 13 |
| 14 <command detect_errors="aggressive"> | 14 <command detect_errors="aggressive"> |
| 21 --output_pdf $output_pdf | 21 --output_pdf $output_pdf |
| 22 ]]> | 22 ]]> |
| 23 </command> | 23 </command> |
| 24 | 24 |
| 25 <inputs> | 25 <inputs> |
| 26 <param name="input_rdata" type="data" format="rdata" label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"/> | 26 <param name="input_rdata" type="data" format="rdata" |
| 27 label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)" | |
| 28 help="This is the RData output file from the block.splsda function." /> | |
| 27 <section name="adv" title="Advanced Options" expanded="false"> | 29 <section name="adv" title="Advanced Options" expanded="false"> |
| 28 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue="" label="Plot legend"/> | 30 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue="" |
| 29 <param name="ellipse" type="boolean" checked="true" truevalue="--ellipse" falsevalue="" label="Plot ellipse plots"/> | 31 label="Plot legend" /> |
| 32 <param name="ellipse" type="boolean" checked="true" truevalue="--ellipse" falsevalue="" | |
| 33 label="Plot ellipse plots" /> | |
| 30 </section> | 34 </section> |
| 31 </inputs> | 35 </inputs> |
| 32 | 36 |
| 33 <outputs> | 37 <outputs> |
| 34 <data name="output_pdf" format="pdf" label="plotIndiv.pdf" /> | 38 <data name="output_pdf" format="pdf" label="plotIndiv.pdf" /> |