Mercurial > repos > ppericard > mixomics_blocksplsda

comparison mixomics_plotvar.xml @ 4:b0ab97ffc2a1 draft

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planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 0bf5c0745f406f2eca9c708a062c975b1f7ea386
author ppericard
date Mon, 09 Mar 2020 11:53:32 -0400
parents 655d1fbcd3e6
children
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3:0a3c83f2197a 4:b0ab97ffc2a1
1 <tool id="mixomics_plotvar" name="mixOmics plotVar" version="0.2.0" profile="16.04" workflow_compatible="true"> 1 <tool id="mixomics_plotvar" name="mixOmics plotVar" version="0.3.0" profile="16.04" workflow_compatible="true">
2 2
3 <description>provides variables representation for (regularized) CCA, (sparse) PLS regression, PCA and (sparse) Regularized generalised CCA</description> 3 <description>provides variables representation for (regularized) CCA, (sparse) PLS regression, PCA and (sparse) Regularized generalised CCA</description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="package" version="6.8">bioconductor-mixomics</requirement> 6 <requirement type="package" version="6.8">bioconductor-mixomics</requirement>
7 <requirement type="package" version="2.0">r-argparse</requirement> 7 <requirement type="package" version="2.0">r-argparse</requirement>
8 </requirements> 8 </requirements>
9 9
10 <stdio> 10 <stdio>
11 <!-- <exit_code range="1:" level="fatal" /> --> 11 <!-- <exit_code range="1:" level="fatal" /> -->
12 </stdio> 12 </stdio>
13 13
14 <command detect_errors="aggressive"> 14 <command detect_errors="aggressive">
21 --output_pdf $output_pdf 21 --output_pdf $output_pdf
22 ]]> 22 ]]>
23 </command> 23 </command>
24 24
25 <inputs> 25 <inputs>
26 <param name="input_rdata" type="data" format="rdata" label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"/> 26 <param name="input_rdata" type="data" format="rdata"
27 label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"
28 help="This is the RData output file from the block.splsda function." />
27 <section name="adv" title="Advanced Options" expanded="false"> 29 <section name="adv" title="Advanced Options" expanded="false">
28 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue="" label="Plot legend"/> 30 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue=""
29 <param name="cutoff" type="float" value="0" min="0" max="1" label="Cut-off" /> 31 label="Plot legend" />
32 <param name="cutoff" type="float" value="0" min="0" max="1"
33 label="Cut-off"
34 help="Only selected variables whose correlation with the first or second axis is greater than Cut-off in absolute value will be plotted." />
30 </section> 35 </section>
31 </inputs> 36 </inputs>
32 37
33 <outputs> 38 <outputs>
34 <data name="output_pdf" format="pdf" label="plotVar.pdf" /> 39 <data name="output_pdf" format="pdf" label="plotVar.pdf" />