diff matCor_addVar.xml @ 3:0a3c83f2197a draft

planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 24b8259494ac7ab10cbd1f9ee991f455a7507590-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/matCor_addVar.xml	Fri Oct 25 07:10:59 2019 -0400
@@ -0,0 +1,43 @@
+<tool id="matCor_addVar" name="matCor_addVar" version="0.2.0" profile="16.04" workflow_compatible="true">
+
+    <description></description>
+    
+    <requirements>
+        <requirement type="package" version="6.8">bioconductor-mixomics</requirement>
+        <requirement type="package" version="2.0">r-argparse</requirement>
+    </requirements>
+    
+    <stdio>
+        <!-- <exit_code range="1:" level="fatal" /> -->
+    </stdio>
+
+    <command detect_errors="aggressive">
+        <![CDATA[
+        Rscript
+        ${__tool_directory__}/matCor_addVar_wrapper.R
+        --input_rdata ${input_rdata}
+        --cutoff_comp ${cutoff_comp}
+        --mat_block_Y_file ${mat_block_Y}
+        --output_rdata ${output_rdata}
+        --output_blocks_comb ${output_blocks_comb}
+        ]]>
+    </command>
+
+    <inputs>
+        <param name="input_rdata" type="data" format="rdata" label="Input RData file from block.SPLSDA"/>
+        <param name="cutoff_comp" type="float" value="0.8" min="0" max="1" label="" help="" />
+        <param name="mat_block_Y" type="data" format="tabular" label="Matrix Block Y" />
+    </inputs>
+
+    <outputs>
+        <data name="output_rdata" format="rdata" label="${tool.name}_output.rdata" />
+        <data name="output_blocks_comb" format="tabular" label="${tool.name}_blocks_comb.tsv" />
+    </outputs>
+
+    <tests>
+    </tests>
+
+    <help>
+    </help>
+
+</tool>
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