Mercurial > repos > ppericard > mixomics_blocksplsda
diff circleCor.xml @ 4:b0ab97ffc2a1 draft
planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 0bf5c0745f406f2eca9c708a062c975b1f7ea386
author | ppericard |
---|---|
date | Mon, 09 Mar 2020 11:53:32 -0400 |
parents | 0a3c83f2197a |
children |
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--- a/circleCor.xml Fri Oct 25 07:10:59 2019 -0400 +++ b/circleCor.xml Mon Mar 09 11:53:32 2020 -0400 @@ -1,7 +1,7 @@ -<tool id="circleCor" name="circleCor" version="0.2.0" profile="16.04" workflow_compatible="true"> +<tool id="circleCor" name="circleCor" version="0.3.0" profile="16.04" workflow_compatible="true"> - <description></description> - + <description>plots a correlation circle for the datasets whose correlation circles can be superimposed. This correlation circle contains the selected variables of these datasets which are included in a rectangle and the response variables.</description> + <requirements> <requirement type="package">r-base</requirement> <requirement type="package" version="0.4">r-ellipse</requirement> @@ -10,7 +10,7 @@ <!-- <requirement type="package" version="6.8">bioconductor-mixomics</requirement> --> </requirements> - + <stdio> <!-- <exit_code range="1:" level="fatal" /> --> </stdio> @@ -32,16 +32,24 @@ </command> <inputs> - <param name="input_rdata" type="data" format="rdata" label="Input RData file from block.SPLSDA"/> - <param name="blocks_vec_list" type="data" format="tabular" label="List of blocks vector"/> - <param name="select_blocks" type="select" label="Blocks"> + <param name="input_rdata" type="data" format="rdata" + label="Input RData file" + help="output RData from matCor_addVar"/> + <param name="blocks_vec_list" type="data" format="tabular" + label="List of blocks vector." + help="output tsv file from matCor_addVar"/> + <param name="select_blocks" type="select" + label="Blocks" + help="list of the blocks that are to be superimposed"> <options from_dataset="blocks_vec_list"> <column name="value" index="0"/> <filter type="unique_value" column="0"/> <filter type="sort_by" name="sorted_value" column="0"/> </options> </param> - <param name="responses_var_list" type="data" format="tabular" label="List of response variables"/> + <param name="responses_var_list" type="data" format="txt" + label="List of response variables" + help="list of the response variables which will be plotted in the correlation circle"/> <param name="select_responses_var" type="select" display="checkboxes" multiple="true" label="Response variables"> <!-- <param name="select_responses_var" type="select" multiple="true" label="Response variables"> --> <options from_dataset="responses_var_list"> @@ -50,10 +58,14 @@ <filter type="sort_by" name="sorted_value" column="0"/> </options> </param> - <param name="x_min" type="float" value="-1" min="-1" max="1" label="X min" help="" /> - <param name="x_max" type="float" value="1" min="-1" max="1" label="X max" help="" /> - <param name="y_min" type="float" value="-1" min="-1" max="1" label="Y min" help="" /> - <param name="y_max" type="float" value="1" min="-1" max="1" label="Y max" help="" /> + <param name="x_min" type="float" value="-1" min="-1" max="1" + label="X min" help="" /> + <param name="x_max" type="float" value="1" min="-1" max="1" + label="X max" help="" /> + <param name="y_min" type="float" value="-1" min="-1" max="1" + label="Y min" help="" /> + <param name="y_max" type="float" value="1" min="-1" max="1" + label="Y max" help="" /> </inputs> <outputs>