comparison mixomics_blocksplsda.xml @ 1:e93350dc99f1 draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 1eda261d4fe137d6e8806b0c6af7eaf12d11ac95"

0:d0b77b926863

<tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="1.0" profile="16.04" workflow_compatible="true">

    <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description>

    <requirements>
        <requirement type="package" version="6.12">bioconductor-mixomics</requirement>

        ${adv.check_missing_values}
        ##--init ${adv.init}
        ##--tol ${adv.tol}
        ##${adv.nearzerovar}
        --rdata_out ${rdata_out}
        --sample_metadata_out ${sample_metadata_out}
        --variable_metadata_outdir outdir
        ]]>
    </command>

    <inputs>

        </section>
    </inputs>

    <outputs>
        <data name="rdata_out" format="rdata" label="${tool.name}_output.rdata" />
        <data name="sample_metadata_out" format="tabular"
              label="${tool.name}_${sample_metadata_in.name}" />
        <collection name="blocks_output" type="list" label="${tool.name}_blocks_output">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.tsv"
                               directory="outdir" format="tabular" />
        </collection>
    </outputs>

1:e93350dc99f1

<tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="6.12+galaxy0" profile="16.04" workflow_compatible="true">

    <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description>

    <requirements>
        <requirement type="package" version="6.12">bioconductor-mixomics</requirement>

        ${adv.check_missing_values}
        ##--init ${adv.init}
        ##--tol ${adv.tol}
        ##${adv.nearzerovar}
        --rdata_out ${rdata_out}
        ##--sample_metadata_out ${sample_metadata_out}
        --variable_metadata_outdir outdir
        ]]>
    </command>

    <inputs>

        </section>
    </inputs>

    <outputs>
        <data name="rdata_out" format="rdata" label="${tool.name}_output.rdata" />
        <!-- <data name="sample_metadata_out" format="tabular"
              label="${tool.name}_${sample_metadata_in.name}" /> -->
        <collection name="blocks_output" type="list" label="${tool.name}_blocks_output">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.tsv"
                               directory="outdir" format="tabular" />
        </collection>
    </outputs>