diff viscorvar_circlecor.xml @ 5:88c1fd2ac110 draft default tip

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 21d09ff286a496ff475f32626d88dd42423ae663"

--- a/viscorvar_circlecor.xml	Tue Nov 17 13:01:44 2020 +0000
+++ b/viscorvar_circlecor.xml	Tue Sep 07 10:40:08 2021 +0000
@@ -26,8 +26,6 @@
         --output_var ${output_var}
         --output_pdf ${output_pdf}
 
-        @COMMAND_LOG_EXIT@
-
     ]]></command>
     <inputs>
         <param name="input_rdata" type="data" format="rdata"
@@ -35,7 +33,7 @@
                help="this is the RData output file from the matCorAddVar function"/>
         <param name="blocks_vec_list" type="data" format="tabular"
                label="List of blocks vector."
-               help="output *_blocks_comb.tsv file from matCorAddVar."/>
+               help="output *_blocks_comb.tsv file from the matCorAddVar function."/>
         <param name="select_blocks" type="select"
                label="Blocks"
                help="each element of List of blocks vector contain blocks for which selected variables can
@@ -48,7 +46,7 @@
         </param>
         <param name="responses_var_list" type="data" format="tabular"
                label="List of response variables."
-               help="output *_response_var.tsv file from matCorAddVar"/>
+               help="output *_response_var.tsv file from the matCorAddVar function"/>
         <param name="select_responses_var" type="select" display="checkboxes"
                multiple="true" label="Response variables"
                help="choose the response variables which will be plotted in the correlation circle">
@@ -89,11 +87,10 @@
 Description
 -----------
 
-This tool allows visualizing variables of omics datasets which are correlated with
-the response variables thanks to correlation circles. The determination of the omics
-datasets which can be visualized is made by the tool matCorAddVar. This tool performs
+This tool allows visualizing variables of omics datasets which are correlated with response variables thanks to correlation circles. The determination of the omics
+datasets which can be visualized is made by the matCorAddVar tool. This tool performs
 a zoom in a rectangle to retrieve omics datasets variables which are correlated with a
-response variable. 
+response variable.
 
 -----------------
 Workflow position
@@ -126,9 +123,9 @@
 +===========================================================+===========+
 | 1 : Rdata visCorVar.matCorAddVar output                   |  rdata    |
 +-----------------------------------------------------------+-----------+
-| 2 : ``*``_blocks_comb.tsv visCorVar.matCorAddVar output   |  tabular  |
+| 2 : \*_blocks_comb.tsv visCorVar.matCorAddVar output      |  tabular  |
 +-----------------------------------------------------------+-----------+
-| 3 : ``*``_response_var.tsv visCorVar.matCorAddVar output  |  tabular  |
+| 3 : \*_response_var.tsv visCorVar.matCorAddVar output     |  tabular  |
 +-----------------------------------------------------------+-----------+
 
 ----------
@@ -145,10 +142,10 @@
     Correlation circle pdf file
 
 viscorvar_circlecor_selected_var.tsv
-	List of variables selected in the correlation circle
+	List of selected variables which are contained in a rectangle of the correlation circle
 
     ]]></help>
 
     <expand macro="citations" />
 
-</tool>
\ No newline at end of file
+</tool>