Mercurial > repos > ppericard > viscorvar

diff macros.xml @ 2:c8533e9298e5 draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
author ppericard
date Fri, 23 Oct 2020 10:15:56 +0000
parents
children d4e9f7546dfa
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Oct 23 10:15:56 2020 +0000
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1" level="fatal" />
+        </stdio>
+    </xml>
+
+    <!-- COMMAND -->
+    <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token>
+
+    <token name="@COMMAND_LOG_EXIT@">
+        ;
+        return=\$?;
+        cat 'log.txt';
+        sh -c "exit \$return"
+    </token>
+
+    <token name="@HELP_AUTHORS_WRAPPERS@">
+
+.. class:: infomark
+
+**Galaxy integration** bilille platform - UMS 2014 / US 41 - Université de Lille, CNRS, Inserm, Institut Pasteur de Lille, CHU Lille
+
+ | Contact bilille@univ-lille.fr for any questions or concerns about the Galaxy implementation of this tool.
+
+    </token>
+
+</macros>
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