diff viscorvar_computematsimilarity.xml @ 2:c8533e9298e5 draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/viscorvar_computematsimilarity.xml	Fri Oct 23 10:15:56 2020 +0000
@@ -0,0 +1,101 @@
+<tool id="viscorvar_computematsimilarity" name="visCorVar computeMatSimilarity" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
+
+    <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>
+
+    <macros>
+        <import>macros.xml</import>
+        <import>macros_viscorvar.xml</import>
+    </macros>
+
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
+
+    <command detect_errors="aggressive"><![CDATA[
+
+        @COMMAND_RSCRIPT@/viscorvar_computematsimilarity.R
+
+        --input_rdata ${input_rdata}
+        
+        --output_rdata ${output_rdata}
+
+        @COMMAND_LOG_EXIT@
+
+    ]]></command>
+
+    <inputs>
+        <param name="input_rdata" type="data" format="rdata"
+               label="Input RData file"
+               help="output RData file from matCorAddVar"/>
+    </inputs>
+
+    <outputs>
+        <data name="output_rdata" format="rdata" label="${tool.name}_output.RData" />
+    </outputs>
+
+    <tests>
+    </tests>
+
+    <help><![CDATA[
+
+@HELP_AUTHORS@
+
+==============================
+visCorVar computeMatSimilarity
+==============================
+
+-----------
+Description
+-----------
+
+Bla bla...
+
+-----------------
+Workflow position
+-----------------
+
+**Upstream tools**
+
+======================== ===================================== ========
+Name                     Output file                           Format
+======================== ===================================== ========
+visCorVar.matCorAddVar   viscorvar_matcoraddvar_output.RData   rdata
+======================== ===================================== ========
+
+**Downstream tools**
+
+====================== ============================================= ========
+Name                   Output file                                   Format
+====================== ============================================= ========
+visCorVar.networkVar   viscorvar_computematsimilarity_output.RData   rdata
+====================== ============================================= ========
+
+---------------------------------------------------
+
+-----------
+Input files
+-----------
+
++------------------------------------------+------------+
+| Parameter : num + label                  |   Format   |
++==========================================+============+
+| 1 : Rdata visCorVar.matCorAddVar output  |   Rdata    |
++------------------------------------------+------------+
+
+----------
+Parameters
+----------
+
+@HELP_MANUAL@
+
+------------
+Output files
+------------
+
+viscorvar_computematsimilarity_output.RData
+    RData output
+
+    ]]></help>
+
+    <expand macro="citations" />
+
+</tool>
\ No newline at end of file