diff computeMatSimilarity.xml @ 0:d0b77b926863 draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/computeMatSimilarity.xml	Tue Jun 23 19:57:35 2020 -0400
@@ -0,0 +1,39 @@
+<tool id="computeMatSimilarity" name="computeMatSimilarity" version="1.0" profile="16.04" workflow_compatible="true">
+
+    <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>
+
+    <requirements>
+        <requirement type="package" version="6.12">bioconductor-mixomics</requirement> <!-- Remove when viscorvar is available via conda -->
+        <requirement type="package" version="2.0">r-argparse</requirement>
+    </requirements>
+
+    <stdio>
+        <!-- <exit_code range="1:" level="fatal" /> -->
+    </stdio>
+
+    <command detect_errors="aggressive">
+        <![CDATA[
+        Rscript
+        ${__tool_directory__}/computeMatSimilarity_wrapper.R
+        --input_rdata ${input_rdata}
+        --output_rdata ${output_rdata}
+        ]]>
+    </command>
+
+    <inputs>
+        <param name="input_rdata" type="data" format="rdata"
+               label="Input RData file"
+               help="output RData file from matCorAddVar"/>
+    </inputs>
+
+    <outputs>
+        <data name="output_rdata" format="rdata" label="${tool.name}_output.rdata" />
+    </outputs>
+
+    <tests>
+    </tests>
+
+    <help>
+    </help>
+
+</tool>
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