diff mixomics_plotindiv.xml @ 4:d4e9f7546dfa draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"

--- a/mixomics_plotindiv.xml	Fri Oct 23 11:26:18 2020 +0000
+++ b/mixomics_plotindiv.xml	Tue Nov 17 13:01:44 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
+<tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="@TOOL_VERSION@+galaxy2" profile="16.04" workflow_compatible="true">
 
     <description>provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA)</description>
 
@@ -21,14 +21,12 @@
 
         --output_pdf $output_pdf
 
-        @COMMAND_LOG_EXIT@
-
     ]]></command>
 
     <inputs>
         <param name="input_rdata" type="data" format="rdata"
                label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"
-               help="This is the RData output file from the block.splsda function." />
+               help="this is the RData output file from the block.splsda function" />
         <section name="adv" title="Advanced Options" expanded="false">
             <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue=""
                    label="Plot legend" />
@@ -60,8 +58,7 @@
 Description
 -----------
 
-The plotIndiv function is part of the mixOmics package for exploration and integration of Omics datasets.
-Provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA).
+This tool allows visualizing the samples on a two dimensionnal graphic. An effect can be visualized along the abscissa axis and along the ordinate axis.
 
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 Workflow position