diff viscorvar_circlecor.xml @ 4:d4e9f7546dfa draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"

--- a/viscorvar_circlecor.xml	Fri Oct 23 11:26:18 2020 +0000
+++ b/viscorvar_circlecor.xml	Tue Nov 17 13:01:44 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="viscorvar_circlecor" name="visCorVar circleCor" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
+<tool id="viscorvar_circlecor" name="visCorVar circleCor" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true">
 
     <description>plots a correlation circle for the datasets whose correlation circles can be superimposed. This correlation circle contains the selected variables of these datasets which are included in a rectangle and the response variables.</description>
 
@@ -29,17 +29,17 @@
         @COMMAND_LOG_EXIT@
 
     ]]></command>
-
     <inputs>
         <param name="input_rdata" type="data" format="rdata"
                label="Input RData file"
-               help="output RData from matCorAddVar"/>
+               help="this is the RData output file from the matCorAddVar function"/>
         <param name="blocks_vec_list" type="data" format="tabular"
                label="List of blocks vector."
-               help="output *_blocks_comb.tsv file from matCorAddVar"/>
+               help="output *_blocks_comb.tsv file from matCorAddVar."/>
         <param name="select_blocks" type="select"
                label="Blocks"
-               help="list of the blocks that are to be superimposed">
+               help="each element of List of blocks vector contain blocks for which selected variables can
+               be visualized in the correlation circle">
             <options from_dataset="blocks_vec_list">
                 <column name="value" index="0"/>
                 <filter type="unique_value" column="0"/>
@@ -47,11 +47,11 @@
             </options>
         </param>
         <param name="responses_var_list" type="data" format="tabular"
-               label="List of response variables"
+               label="List of response variables."
                help="output *_response_var.tsv file from matCorAddVar"/>
         <param name="select_responses_var" type="select" display="checkboxes"
                multiple="true" label="Response variables"
-               help="select the response variables which will be plotted in the correlation circle">
+               help="choose the response variables which will be plotted in the correlation circle">
         <!-- <param name="select_responses_var" type="select" multiple="true" label="Response variables"> -->
             <options from_dataset="responses_var_list">
                 <column name="value" index="0"/>
@@ -89,7 +89,11 @@
 Description
 -----------
 
-Bla bla...
+This tool allows visualizing variables of omics datasets which are correlated with
+the response variables thanks to correlation circles. The determination of the omics
+datasets which can be visualized is made by the tool matCorAddVar. This tool performs
+a zoom in a rectangle to retrieve omics datasets variables which are correlated with a
+response variable. 
 
 -----------------
 Workflow position