Mercurial > repos > pravs > msms_extractor
comparison MSMS_Extractor.xml @ 7:8741bc3644d4 draft
planemo upload
| author | pravs |
|---|---|
| date | Wed, 09 Aug 2017 16:55:36 -0400 |
| parents | 2c3e2509e9bc |
| children | 5a1ec6c352e3 |
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| 6:2c3e2509e9bc | 7:8741bc3644d4 |
|---|---|
| 1 | 1 |
| 2 <tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.1"> | 2 <tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.2"> |
| 3 <description>Extract scans based on PSM report from the mzML file(s).</description> | 3 <description>Extract scans based on PSM report from the mzML file(s).</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="3.0.9016">proteowizard</requirement> | 5 <requirement type="package" version="3_0_9992">proteowizard</requirement> |
| 6 <requirement type="package" version="3.4">pyteomics</requirement> | 6 <requirement type="package" version="3.4">pyteomics</requirement> |
| 7 </requirements> | 7 </requirements> |
| 8 <command interpreter="python"><![CDATA[MSMS_Extractor.py $spectrumfile $psmreportfile $output ${spectrumfile.name.rsplit('.',1)[0]} $removeretain.doremoveretain $removeretain.num_random_scans]]></command> | 8 <command interpreter="python"><![CDATA[MSMS_Extractor.py $spectrumfile $psmreportfile $output ${spectrumfile.name.rsplit('.',1)[0]} $removeretain.doremoveretain $removeretain.num_random_scans]]></command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param name="spectrumfile" type="data" format="mzml"> | 10 <param name="spectrumfile" type="data" format="mzml"> |