# HG changeset patch
# User pravs
# Date 1501783757 14400
# Node ID 59654a11787e777a8f37e9f893a2f48e7e4eb7d9
# Parent  e7c63cfef363381f717033870c016ad1b574a606
planemo upload

diff -r e7c63cfef363 -r 59654a11787e MSMS_Extractor.xml
--- a/MSMS_Extractor.xml	Thu Aug 03 14:00:33 2017 -0400
+++ b/MSMS_Extractor.xml	Thu Aug 03 14:09:17 2017 -0400
@@ -34,12 +34,18 @@
   <help>
 MSMS_Extractor reads scan numbers from the PSM report (scan numbers with identified PSM) and gives option to create a new mzml file, either with those scans or without those scans.
 
-Remove option:
+----
+
+REMOVE option:
+
 Creates a new mzml file with all the unidentified scans (removes those that are in the PSM report).
 
-Retain option:
+
+RETAIN option:
+
 Creates a new mzml file with only those scans that is present in the PSM report. In addition to this, it also has an option to add N number of randomly selected scans to the output mzml file.
 
+----
 
 Please Note: This tool currently works only with PeptideShaker generated PSM report file.