# HG changeset patch
# User pravs
# Date 1502384095 14400
# Node ID 5a1ec6c352e35c92f773b7d56d766fd7e1629b5f
# Parent  8741bc3644d4027895d76f04dec6aad44d39886a
planemo upload

diff -r 8741bc3644d4 -r 5a1ec6c352e3 MSMS_Extractor.xml
--- a/MSMS_Extractor.xml	Wed Aug 09 16:55:36 2017 -0400
+++ b/MSMS_Extractor.xml	Thu Aug 10 12:54:55 2017 -0400
@@ -1,5 +1,5 @@
 
-<tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.2">
+<tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.2.0">
   <description>Extract scans based on PSM report from the mzML file(s).</description>
   <requirements>
       <requirement type="package" version="3_0_9992">proteowizard</requirement>
@@ -15,7 +15,11 @@
     </param>
     
     <conditional name="removeretain">
-        <param name="doremoveretain" type="boolean" truevalue="retain" falsevalue="remove" label="Retain or Remove the given Scans" help="Retain=Yes; Remove=No (default)" />
+        <param name="doremoveretain" type="select" display="radio" label="Retain or Remove the MS/MS scans that were identified in PSM report">
+            <option value="remove" selected="True">Remove the scans reported in the PSM Report File</option>
+            <option value="retain">Retain the scans reported in the PSM Report File </option>
+        </param>
+        
         <when value="remove">
             <param name="num_random_scans" type="hidden" value="0" />
         </when>