Mercurial > repos > pravs > peptidegenomiccoordinate

changeset 3:95d606bdfef7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author pravs
date Sun, 17 Jun 2018 04:55:42 -0400
parents 1b61f7aafb61
children b56922070a1b
files peptideGenomicCoordinate.py peptideGenomicCoordinate.xml
diffstat 2 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/peptideGenomicCoordinate.py	Tue Jun 12 13:07:36 2018 -0400
+++ b/peptideGenomicCoordinate.py	Sun Jun 17 04:55:42 2018 -0400
@@ -2,7 +2,7 @@
 # 
 # Author: Praveen Kumar
 # University of Minnesota
-#
+# Galaxy-P Team
 # Get peptide's genomic coordinate from the protein's genomic mapping sqlite file (which is derived from the https://toolshed.g2.bx.psu.edu/view/galaxyp/translate_bed/038ecf54cbec)
 # 
 # python peptideGenomicCoordinate.py <peptide_list> <mz_to_sqlite DB> <genomic mapping file DB> <output.bed>
--- a/peptideGenomicCoordinate.xml	Tue Jun 12 13:07:36 2018 -0400
+++ b/peptideGenomicCoordinate.xml	Sun Jun 17 04:55:42 2018 -0400
@@ -6,11 +6,13 @@
     <command detect_errors="aggressive"><![CDATA[
         python '$__tool_directory__/peptideGenomicCoordinate.py' '$peptideinput' '$mzsqlite' '$mapping' '$peptide_bed'
     ]]></command>
+    
     <inputs>
         <param type="data" name="peptideinput" format="tabular" label="Peptide List (without any header line)"/>
         <param type="data" name="mzsqlite" format="sqlite" label="mz to sqlite (mzsqlite) file"/>
         <param type="data" name="mapping" format="sqlite" label="genomic mapping sqlite file"/>
     </inputs>
+    
     <outputs>
         <data format="bed" name="peptide_bed" label="${tool.name} on ${on_string}">
             <actions>
@@ -18,6 +20,7 @@
             </actions>
         </data>
     </outputs>
+    
     <tests>
         <test>
             <param name="peptide_input" value="peptides.tabular"/>