Mercurial > repos > pravs > protein_rna_correlation
comparison protein_rna_correlation.xml @ 9:e407b1a7a8de draft
planemo upload
| author | pravs |
|---|---|
| date | Wed, 20 Jun 2018 21:42:36 -0400 |
| parents | 80892c607b1e |
| children | c2ac6f10b456 |
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| 8:80892c607b1e | 9:e407b1a7a8de |
|---|---|
| 1 <tool id="protein_rna_correlation" name="protein_rna_correlation" version="0.0.2"> | 1 <tool id="protein_rna_correlation" name="protein_rna_correlation" version="0.0.2"> |
| 2 <description>Correlation between protein and transcript expression </description> | 2 <description>Correlation between protein and transcript expression </description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.2.1">R</requirement> | 4 <requirement type="package" version="3.2.1">R</requirement> |
| 5 <requirement type="package" version="0.0.1">r-protrnacorr</requirement> | 5 <requirement type="package" version="0.0.1">r-protrnacorr</requirement> |
| 6 <!--<requirement type="package" version="9.07">ghostscript</requirement>--> | 6 <requirement type="package" version="9.10">ghostscript</requirement> |
| 7 <requirement type="package" version="1.5.0">packagelibx</requirement> | 7 <!--<requirement type="package" version="1.5.0">packagelibx</requirement>--> |
| 8 </requirements> | 8 </requirements> |
| 9 <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[protein_rna_correlation.r $pe_exp $ge_exp $pe_idcol $ge_idcol $pe_expcol $ge_expcol $pe_idtype $ge_idtype $organism_map $writeMapUnmap $doScale $html_file $html_file.files_path]]></command> | 9 <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[protein_rna_correlation.r $pe_exp $ge_exp $pe_idcol $ge_idcol $pe_expcol $ge_expcol $pe_idtype $ge_idtype $organism_map $writeMapUnmap $doScale $html_file $html_file.files_path]]></command> |
| 10 <inputs> | 10 <inputs> |
| 11 <param name="pe_exp" type="data" format="tabular"> | 11 <param name="pe_exp" type="data" format="tabular"> |
| 12 <label>Input Protein Expression File</label> | 12 <label>Input Protein Expression File</label> |