Mercurial > repos > pravs > protein_rna_correlation
comparison protein_rna_correlation.xml @ 10:c2ac6f10b456 draft default tip
planemo upload
| author | pravs |
|---|---|
| date | Wed, 22 Aug 2018 15:08:45 -0400 |
| parents | e407b1a7a8de |
| children |
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| 9:e407b1a7a8de | 10:c2ac6f10b456 |
|---|---|
| 2 <description>Correlation between protein and transcript expression </description> | 2 <description>Correlation between protein and transcript expression </description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.2.1">R</requirement> | 4 <requirement type="package" version="3.2.1">R</requirement> |
| 5 <requirement type="package" version="0.0.1">r-protrnacorr</requirement> | 5 <requirement type="package" version="0.0.1">r-protrnacorr</requirement> |
| 6 <requirement type="package" version="9.10">ghostscript</requirement> | 6 <requirement type="package" version="9.10">ghostscript</requirement> |
| 7 <!--<requirement type="package" version="1.5.0">packagelibx</requirement>--> | |
| 8 </requirements> | 7 </requirements> |
| 9 <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[protein_rna_correlation.r $pe_exp $ge_exp $pe_idcol $ge_idcol $pe_expcol $ge_expcol $pe_idtype $ge_idtype $organism_map $writeMapUnmap $doScale $html_file $html_file.files_path]]></command> | 8 <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[ |
| 9 protein_rna_correlation.r | |
| 10 $pe_exp | |
| 11 $ge_exp | |
| 12 $pe_idcol | |
| 13 $ge_idcol | |
| 14 $pe_expcol | |
| 15 $ge_expcol | |
| 16 $pe_idtype | |
| 17 $ge_idtype | |
| 18 $organism_map | |
| 19 $writeMapUnmap | |
| 20 $doScale | |
| 21 $html_file | |
| 22 $html_file.files_path]]> | |
| 23 </command> | |
| 10 <inputs> | 24 <inputs> |
| 11 <param name="pe_exp" type="data" format="tabular"> | 25 <param name="pe_exp" type="data" format="tabular"> |
| 12 <label>Input Protein Expression File</label> | 26 <label>Input Protein Expression File</label> |
| 13 </param> | 27 </param> |
| 14 <param name="pe_idcol" type="integer" value="1"> | 28 <param name="pe_idcol" type="integer" value="1"> |