Mercurial > repos > pravs > protein_rna_correlation

diff protein_rna_correlation.xml @ 10:c2ac6f10b456 draft default tip

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planemo upload
author pravs
date Wed, 22 Aug 2018 15:08:45 -0400
parents e407b1a7a8de
children
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line diff
--- a/protein_rna_correlation.xml	Wed Jun 20 21:42:36 2018 -0400
+++ b/protein_rna_correlation.xml	Wed Aug 22 15:08:45 2018 -0400
@@ -4,9 +4,23 @@
     <requirement type="package" version="3.2.1">R</requirement>
     <requirement type="package" version="0.0.1">r-protrnacorr</requirement>
     <requirement type="package" version="9.10">ghostscript</requirement>
-    <!--<requirement type="package" version="1.5.0">packagelibx</requirement>-->
   </requirements>
-  <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[protein_rna_correlation.r $pe_exp $ge_exp $pe_idcol $ge_idcol $pe_expcol $ge_expcol $pe_idtype $ge_idtype $organism_map $writeMapUnmap $doScale $html_file $html_file.files_path]]></command>
+  <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[
+  protein_rna_correlation.r 
+  $pe_exp 
+  $ge_exp 
+  $pe_idcol 
+  $ge_idcol 
+  $pe_expcol 
+  $ge_expcol 
+  $pe_idtype 
+  $ge_idtype 
+  $organism_map 
+  $writeMapUnmap 
+  $doScale 
+  $html_file 
+  $html_file.files_path]]>
+  </command>
   <inputs>
     <param name="pe_exp" type="data" format="tabular">
       <label>Input Protein Expression File</label>