# HG changeset patch # User pravs # Date 1529223606 14400 # Node ID fc89f8c3b777c252b63f6d0bd4f452eb228ac1ab planemo upload diff -r 000000000000 -r fc89f8c3b777 protein_rna_correlation.r --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/protein_rna_correlation.r Sun Jun 17 04:20:06 2018 -0400 @@ -0,0 +1,1025 @@ +#================================================================================== +# About the script +#================================================================================== + # Version: V1 + # This script works for single sample only + # It takes GE (Gene Expression) and PE (Protein expression) data of one sample and perform correlation, regression analysis between PE and GE data + # Input data can be of tsv format + # Script also need a parameter or option file + +#================================================================================== +# Dependencies +#================================================================================== + # Following R package has to be installed. + # data.table + # gplots + # MASS + # DMwR + # mgcv + # It can be installed by following R command in R session. e.g. install.packages("data.table") + +#================================================================================== +# How to Run +#================================================================================== + # Rscript PE_GE_association_singleSample_V1.r + +#================================================================================== +# Arguments +#================================================================================== + # Arg1. : PE data (tsv format) + # Arg2. : GE data (tsv format) + # Arg3.