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author pravs
date Wed, 02 Aug 2017 18:20:55 -0400
parents 9ec27561593e
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0:9ec27561593e 1:d49328dfeceb
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2 <tool id="removeFastaSubSequence" name="Remove Fasta Substring Sequence" version="1.0.0"> 2 <tool id="removeFastaSubSequence" name="Remove Fasta Substring Sequence" version="1.0.0">
3 <description>Removes sequences that are subsequence in a reference Fasta File.</description> 3 <description>Removes sequences from query fasta file that are present in a reference Fasta File.</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.70">biopython</requirement> 5 <requirement type="package" version="1.70">biopython</requirement>
6 </requirements> 6 </requirements>
7 <command interpreter="python"><![CDATA[removeFastaSubSequence.py $ref_fastafile $query_fastafile $output]]></command> 7 <command interpreter="python"><![CDATA[removeFastaSubSequence.py $ref_fastafile $query_fastafile $output]]></command>
8 <inputs> 8 <inputs>
30 </test> 30 </test>
31 </tests> 31 </tests>
32 32
33 33
34 <help> 34 <help>
35 This program removes the sequences from the query fasta file that are present as subsequence in a reference fasta file. 35 This program removes the sequences from the query fasta file that are present in a reference fasta file (removes even those query sequences that are present as substring in reference fasta file).
36 36
37 EXAMPLE: 37 EXAMPLE:
38 38
39 ---- 39 ----
40 40