Mercurial > repos > prog > lcmsmatching
annotate RemotedbConn.R @ 1:253d531a0193 draft
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
author | prog |
---|---|
date | Sat, 03 Sep 2016 17:02:01 -0400 |
parents | |
children | 20d69a062da3 |
rev | line source |
---|---|
1
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
1 if ( ! exists('RemotedbConn')) { |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
2 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
3 source('BiodbConn.R') |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
4 source(file.path('UrlRequestScheduler.R'), chdir = TRUE) |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
5 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
6 ##################### |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
7 # CLASS DECLARATION # |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
8 ##################### |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
9 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
10 RemotedbConn <- setRefClass("RemotedbConn", contains = "BiodbConn", fields = list(.scheduler = "UrlRequestScheduler")) |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
11 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
12 ############### |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
13 # CONSTRUCTOR # |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
14 ############### |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
15 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
16 RemotedbConn$methods( initialize = function(useragent = NA_character_, scheduler = NULL, ...) { |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
17 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
18 # Check useragent |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
19 ( ! is.null(useragent) && ! is.na(useragent)) || stop("You must specify a valid useragent string (e.g.: \"myapp ; my.email@address\").") |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
20 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
21 # Set scheduler |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
22 if (is.null(scheduler)) |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
23 scheduler <- UrlRequestScheduler$new(n = 3) |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
24 inherits(scheduler, "UrlRequestScheduler") || stop("The scheduler instance must inherit from UrlRequestScheduler class.") |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
25 scheduler$setUserAgent(useragent) # set agent |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
26 .scheduler <<- scheduler |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
27 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
28 callSuper(...) # calls super-class initializer with remaining parameters |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
29 }) |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
30 |
253d531a0193
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b
prog
parents:
diff
changeset
|
31 } |