Mercurial > repos > prog > lcmsmatching
annotate tolst.R @ 4:b34c14151f25 draft
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 494194bb501d1d7033613131865f7bd68976041c
author | prog |
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date | Tue, 14 Mar 2017 12:40:22 -0400 |
parents | e66bb061af06 |
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e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
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1 ################## |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
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2 # OBJECT TO LIST # |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
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3 ################## |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
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4 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
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5 .object_to_list <- function(obj) { |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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6 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
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changeset
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7 if(is.null(obj)) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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8 return(NULL) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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9 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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10 field_names <- names(obj$getRefClass()$fields()) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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11 l <- c() |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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12 lapply( field_names, function(x) { l<<-c(l,list(obj$field(x))) } ) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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13 names(l) <- field_names |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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14 return(l) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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15 } |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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16 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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17 ########### |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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18 # TO LIST # |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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19 ########### |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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20 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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21 tolst <- function(v) { |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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22 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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23 switch(typeof(v), |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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24 S4 = lst <- .object_to_list(v), |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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25 list = lst <- v, |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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26 stop("Unknown type '", typeof(v), "'.") |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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27 ) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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28 |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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29 return(lst) |
e66bb061af06
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty
prog
parents:
diff
changeset
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30 } |